Recent Articles

Flagellar dynamics and entanglement of E.coli bacteria in polymeric hydrogel

Diksha Shrestha, Deborah Okyere, Sam Mortenson, Jingyi Chen, and Yong Wang

Phys. Rev. E 112, 054404 (2025) - Published 6 November, 2025

The authors investigate how behavior and dynamics of bacterial flagella are affected by complex environments, an area that has been largely unexplored. They visualize dynamics of fluorescently labeled flagellar filaments of E. coli bacteria in a hydrogel and find three distinct types of flagellar motions.

#BiophysicsSpotlight #TheoryExperiment #ElegantVisuals

Effect of stereochemical constraints on the structural properties of folded proteins

Jack A. Logan, Jacob Sumner, Alex T. Grigas, Mark D. Shattuck, and Corey S. O'Hern

Phys. Rev. E 112, 054405 (2025) - Published 6 November, 2025

This study compares a series of coarse-grained protein models of increasing complexity to identify the simplest model that reproduces key structural properties of protein cores. The results show that accurate modeling of protein cores requires capturing the correct size and anisotropic shape of side chains.

#BiophysicsSpotlight #TheoryExperiment #WellStructured

Local volume-conserving lattice Boltzmann model for incompressible multiphase flows

Fang Xiong, Lei Wang, and Xinyue Liu

Phys. Rev. E 112, 055103 (2025) - Published 6 November, 2025

Treecode solver for the calculation of demagnetizing field in general domains

Zixuan Cui, Lei Yang, and Guanghui Hu

Phys. Rev. E 112, 055305 (2025) - Published 6 November, 2025

Simulation of spin dephasing in arbitrary susceptibility fields using physics-informed neural networks

L. T. Rotkopf, J. C. Holzschuh, H.-P. Schlemmer, and C. H. Ziener

Phys. Rev. E 112, 055306 (2025) - Published 6 November, 2025

Directed transport of multiple deformable particles in time-oscillating potentials

Jing-jing Liao, Wei Lin, Jia-jian Li, and Fu-jun Lin

Phys. Rev. E 112, 055404 (2025) - Published 6 November, 2025

Quantization of nonlinear non-Hamiltonian systems

Andy Chia, Wai-Keong Mok, Leong-Chuan Kwek, and Changsuk Noh

Phys. Rev. E 112, 054206 (2025) - Published 5 November, 2025

Learning transitions to extreme events using reservoir computing

Ajit Mahata, S. Leo Kingston, Subrata Ghosh, Syamal K. Dana, and Tomasz Kapitaniak

Phys. Rev. E 112, 054207 (2025) - Published 5 November, 2025

Higher-order shortest paths in hypergraphs

Berné L. Nortier, Simon Dobson, and Federico Battiston

Phys. Rev. E 112, 054302 (2025) - Published 5 November, 2025

Critical prediction of first-order phase transitions based on next-generation reservoir computing

Zhonghua Zhang, Liang Wang, and Wei Xu

Phys. Rev. E 112, 055304 (2025) - Published 5 November, 2025

Two-field theory for phase coexistence of active Brownian particles

Pablo Pérez-Bastías and Rodrigo Soto

Phys. Rev. E 112, 055403 (2025) - Published 5 November, 2025

Simple traffic model as a space-time clustering phenomenon

Aryaman Jha, Kurt Wiesenfeld, Garyoung Lee, and Jorge Laval

Phys. Rev. E 112, 054104 (2025) - Published 4 November, 2025

Optimal control strategy for collisional Brownian engines

Gustavo A. L. Forão

Phys. Rev. E 112, 054105 (2025) - Published 4 November, 2025

Characterizing the mixed eigenstates in kicked top model through the out-of-time-order correlator

Qian Wang and Marko Robnik

Phys. Rev. E 112, 054202 (2025) - Published 4 November, 2025

Anatomy of information scrambling and decoherence in the integrable Sachdev-Ye-Kitaev model

Antonio M. García-García, Chang Liu (刘畅), Lucas Sá, Jacobus J. M. Verbaarschot, and Jie-ping Zheng (郑杰平)

Phys. Rev. E 112, 054203 (2025) - Published 4 November, 2025

Geometric perspective of linear stability of q-states in finite Kuramoto networks on circulant graphs

Yashee Sinha, Priya B. Jain, Antonio Mihara, Rene O. Medrano-T, Ján Mináč, Lyle E. Muller, and Roberto C. Budzinski

Phys. Rev. E 112, 054204 (2025) - Published 4 November, 2025

Fate of traveling waves at the boundary of quantum droplets

Angel Paredes, Jose Guerra-Carmenate, and Humberto Michinel

Phys. Rev. E 112, 054205 (2025) - Published 4 November, 2025

Hydrodynamic interactions of two nearby flagellated microswimmers

Chaojie Mo, Caoxing Mo, Qingfei Fu, Lijun Yang, and Longfei Chen

Phys. Rev. E 112, 055101 (2025) - Published 4 November, 2025

Hydrodynamics of magnetic nanorods

Robert Kuszelewicz

Phys. Rev. E 112, 055102 (2025) - Published 4 November, 2025

Relativistic multistage resonant and trailing-field acceleration induced by large-amplitude Alfvén waves in a strong magnetic field

S. Isayama, S. Matsukiyo, T. Sano, and S. H. Chen

Phys. Rev. E 112, 055201 (2025) - Published 4 November, 2025

This study addresses particle acceleration up to relativistic energies via a nonlinear evolution of a large-amplitude Alfvén wave. A multistage process is observed in numerical particle-in-cell simulations. The results provide insights into coherent wave-particle interactions in collisionless plasmas with potential implications for the understanding of high-energy cosmic-ray generation in astrophysical environments such as pulsar magnetospheres, accretion disks, and relativistic jets.

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