Quantum computing experiments have made remarkable progress in demonstrating key components of error-corrected quantum computing, a prerequisite for scalable quantum computation. While we anticipate the near-term arrival of early fault-tolerant quantum hardware capable of a million reliable quantum operations, the cost of preparing low-noise “magic resource states,” which are necessary for performing universal quantum computation, presents a formidable challenge. The recently proposed partially fault-tolerant architecture based on a space-time efficient analog rotation (STAR) approach attempts to address this challenge by using postselection to prepare low-noise, arbitrary small-angle magic states. Its proposed physical implementation, however, assumes fixed qubit connectivity, resulting in implementation costs closer to leading fully fault-tolerant approaches. In this work, we propose the transversal STAR architecture and co-design it with neutral-atom quantum hardware, deriving explicit and significant savings in logical layout, time, and space overhead. Through detailed circuit-level simulations, we derive the logical noise model for surface-code-based transversal STAR gadgets and verify their composability. At its limit, the transversal STAR architecture with neutral atoms can efficiently simulate local Hamiltonians with a total simulation volume exceeding 600, defined as the product of the number of logical qubits and Hamiltonian evolution timescales. Achieving this limit would require approximately 10 000 physical qubits at a physical error rate of . This is equivalent to a fully fault-tolerant computation requiring over – gates and a potential saving on space-time volume for equivalent simulation over current, state-of-the-art protocols. Finally, we extend the transversal STAR architecture to high-rate quantum low-density parity-check codes, demonstrating how a limited set of highly parallel transversal Clifford gates and generalized small-angle magic injection can be utilized for effective quantum simulation. We anticipate that the co-designed transversal STAR architecture could substantially reduce the physical resources necessary for early fault-tolerant quantum simulation at the megaquop scale.