The rock-paper-scissors game and its generalizations with $\mathcal{S}>3$ species are well-studied models for cyclically interacting populations. Four is, however, the minimum number of species that, by allowing other interactions beyond the single, cyclic loop, breaks both the full intransitivity of the food graph and the one-predator, one-prey symmetry. Lütz et al. [J. Theor. Biol. 317, 286 (2013)] have shown the existence, on a square lattice, of two distinct phases, with either four or three coexisting species. In both phases, each agent is eventually replaced by one of its predators, but these strategy oscillations remain localized as long as the interactions are short ranged. Distant regions may be either out of phase or cycling through different food-web subloops (if any). Here we show that upon replacing a minimum fraction $Q$ of the short-range interactions by long-range ones, there is a Hopf bifurcation, and global oscillations become stable. Surprisingly, to build such long-distance, global synchronization, the four-species coexistence phase requires fewer long-range interactions than the three-species phase, while one would naively expect the opposite to be true. Moreover, deviations from highly homogeneous conditions ($\chi =0$ or 1) increase $Q_{\mathrm{c}}$, and the more heterogeneous is the food web, the harder the synchronization is. By further increasing $Q$, while the three-species phase remains stable, the four-species one has a transition to an absorbing, single-species state. The existence of a phase with global oscillations for $\mathcal{S}>3$, when the interaction graph has multiple subloops and several possible local cycles, leads to the conjecture that global oscillations are a general characteristic, even for large, realistic food webs.

We address the issue of extending thermodynamics to nonequilibrium steady states. Using driven stochastic lattice gases, we ask whether consistent definitions of an effective chemical potential $\mu$, and an effective temperature $T_e$, are possible. $\mu$ and $T_e$ are determined via coexistence, i.e., zero flux of particles and energy between the driven system and a reservoir. In the lattice gas with nearest-neighbor exclusion, temperature is not relevant, and we find that the effective chemical potential, a function of density and drive strength, satisfies the zeroth law, and correctly predicts the densities of coexisting systems. In the Katz-Lebowitz-Spohn driven lattice gas both $\mu$ and $T_e$ need to be defined. We show analytically that in this case the zeroth law is violated for Metropolis exchange rates, and determine the size of the violations numerically. The zeroth law appears to be violated for generic exchange rates. Remarkably, the system-reservoir coupling proposed by Sasa and Tasaki [J. Stat. Phys. 125, 125 (2006)] is free of inconsistencies, and the zeroth law holds. This is because the rate depends only on the state of the donor system, and is independent of that of the acceptor.

In this work we propose a model for the DNA double helix within the tight-binding framework that incorporates the helicity of the molecules. We have studied the localization properties of three DNA sequences, the periodic poly(dG)-poly(dC) and poly(dA)-poly(dT) sequences and the random ATGC sequence (where A is adenine, T is thymine, G is guanine, and C is cytosine), all of which are coupled to the backbone with random site energies representing the environmental fluctuations. We observe that due to the helicity of DNA, electron transport is greatly enhanced and there exists an almost disorder-strength-independent critical value of the hopping integral, which accounts for the helicity of DNA, for which the electronic states become maximally extended. We have also investigated the effect of backbone energetics on the transmission and $I\text{−}V$ characteristics of DNA.

We investigate the time evolution of wave packets in systems with a mixed phase space where regular islands and chaotic motion coexist. For wave packets started in the chaotic sea on average the weight on a quantized torus of the regular island increases due to dynamical tunneling. This flooding weight initially increases linearly and saturates to a value which varies from torus to torus. We demonstrate for the asymptotic flooding weight universal scaling with an effective tunneling coupling for quantum maps and the mushroom billiard. This universality is reproduced by a suitable random matrix model.

In this paper, we demonstrate the variation of nanochannel impedance with bulk (reservoir) electrolyte concentration. The impedance of a nanochannel is shown to correspond to a characteristic deformed semicircular arc. The degree of deformation decreases with increasing concentration, and at a sufficiently low concentration the complex impedance saturates, becoming essentially independent of the reservoir concentration. This behavior is indicative of a surface-conduction dominant regime. Here we demonstrate that this effect extends beyond dc conductance and affects the ac response of the system as well, including both phase relationship and magnitude. The nanochannel resistance, obtained from low-voltage ac measurements, is then used to extract the nanochannel surface charge density. This is found to increase in magnitude with increasing electrolyte concentration.

In this paper we describe the mechanism of the charged particle acceleration in space plasma systems. We consider the interaction of nonrelativistic particles with a sub-Alfvenic plasma jet originated from the magnetic reconnection. The sharp front with increased magnetic field amplitude forms in the jet leading edge. Propagation of the jet in the inhomogeneous background plasma results in front braking. We show that particles can interact with this front in a resonance manner. Synchronization of particle reflections from the front and the front braking provides the stable trapping of particles in the vicinity of the front. This trapping supports the effective particle acceleration along the front. The mechanism of acceleration is potentially important due to the prevalence of the magnetic reconnection in space and astrophysical plasmas.

We present a continuum theoretical model describing the impact of chirality on nematic systems with large flexoelectricity. As opposed to achiral materials, where only one type of the modulated structure can exist in a given material, the model predicts that chirality can stabilize several modulated phases, which have already been observed experimentally [A. Zep et al., J. Mater. Chem. C 1, 46 (2013)].

The renormalization group (RG) methods are still far from being completely understood in quenched disordered systems. In order to gain insight into the nature of the phase transition of these systems, it is common to investigate simple models. In this work we study a real-space RG transformation on the Dyson hierarchical lattice with a random field, which leads to a reconstruction of the RG flow and to an evaluation of the critical exponents of the model at $T=0$. We show that this method gives very accurate estimations of the critical exponents by comparing our results with those obtained by some of us using an independent method.

Technology based on electric-field-induced instabilities on thin polymer film surfaces has emerged as a promising candidate for soft lithography. Typically, the instability is modeled using the perfect dielectric (PD) or the leaky dielectric (LD) model. These assume the electric diffuse layer to be infinitesimally large or small, respectively. In the present work we conduct stability analysis assuming a PD-electrolyte solution interface. The concentration of ions and, hence, the diffuse layer thickness is in general assumed to be of the same order as the electrolyte film thickness. The PD-LD models are then realized as limiting cases of the ratio of the double layer thickness to the film thickness.

The unilateral buckling of a stressed thin film on a substrate has been investigated theoretically in the framework of the Föppl–von Kármán theory of thin plates when an increasing overpressure is considered onto the upper free surface of the film. It is found that, depending on the initial stress in the film and overpressure, two scenarios of evolution may occur. The snap-through of the one-dimensional buckle leading to the full redeposition should take place for low values of the initial stress. When the initial stress exceeds a critical value, a partial redeposition of the buckle should proceed as the overpressure increases. A snap-through while the redeposition mechanism has taken place should also occur for higher values of the overpressure.

Intracellular genetic networks are more intelligent than was first assumed due to their ability to learn. One of the manifestations of this intelligence is the ability to learn associations of two stimuli within gene-regulating circuitry: Hebbian-type learning within the cellular life. However, gene expression is an intrinsically noisy process; hence, we investigate the effect of intrinsic and extrinsic noise on this kind of intracellular intelligence. We report a stochastic resonance in an intracellular associative genetic perceptron, a noise-induced phenomenon, which manifests itself in noise-induced increase of response in efficiency after the learning event under the conditions of optimal stochasticity.

Due to a thermodynamic coupling between the two leaflets comprising a lipid bilayer, compositional lipid domains residing within opposing leaflets are often found in registry. If the system is perturbed by displacing one domain relative to the other, diffusive and advective lipid fluxes are established to restore equilibrium and reestablish domain overlap. In this work, we focus on the advective part of the process, and first derive an analytical expression for the hydrodynamic drag coefficient associated with the advective flow for the special case of perfect domain overlap. The resulting expression identifies parameter regions where sliding friction between the leaflets dominates over viscous dissipation within the leaflets or vice versa. It is shown that in all practically relevant cases, sliding friction between the leaflets is the dominant factor. Finally, we investigate the domain separation dependence of the hydrodynamic drag coefficient via direct simulations of a continuum diffuse interface model, and provide useful empirical expressions for its behavior.

We investigated the relationships between search efficiency, movement strategy, and nonlocal communication in the biological context of animal foraging. We considered situations where the members of a population of foragers perform either Gaussian jumps or Lévy flights, and show that the search time is minimized when communication among individuals occurs at intermediate ranges, independently of the type of movement. Additionally, while Brownian strategies are more strongly influenced by the communication mechanism, Lévy flights still result in shorter overall search durations.

We propose a dynamic model for a system consisting of self-propelled agents in which the influence of an agent on another agent is weighted by geographical distance. A parameter $\alpha$ is introduced to adjust the influence: The smaller value of $\alpha$ means that the closer neighbors have a stronger influence on the moving direction. We find that there exists an optimal value of $\alpha$ leading to the highest degree of direction consensus. The value of optimal $\alpha$ increases as the system size increases, while it decreases as the absolute velocity, the sensing radius, and the noise amplitude increase.

We theoretically investigate the dynamics of two mutually coupled, identical single-mode semi-conductor lasers. For small separation and large coupling between the lasers, symmetry-broken one-color states are shown to be stable. In this case the light outputs of the lasers have significantly different intensities while at the same time the lasers are locked to a single common frequency. For intermediate coupling we observe stable symmetry-broken two-color states, where both lasers lase simultaneously at two optical frequencies which are separated by up to 150 GHz. Using a five-dimensional model, we identify the bifurcation structure which is responsible for the appearance of symmetric and symmetry-broken one-color and two-color states. Several of these states give rise to multistabilities and therefore allow for the design of all-optical memory elements on the basis of two coupled single-mode lasers. The switching performance of selected designs of optical memory elements is studied numerically.

It is commonly known that two-dimensional mean-field models of optical and matter waves with cubic self-attraction cannot produce stable solitons in free space because of the occurrence of collapse in the same setting. By means of numerical analysis and variational approximation, we demonstrate that the two-component model of the Bose-Einstein condensate with the spin-orbit Rashba coupling and cubic attractive interactions gives rise to solitary-vortex complexes of two types: semivortices (SVs, with a vortex in one component and a fundamental soliton in the other), and mixed modes (MMs, with topological charges 0 and $\pm 1$ mixed in both components). These two-dimensional composite modes can be created using the trapping harmonic-oscillator (HO) potential, but remain stable in free space, if the trap is gradually removed. The SVs and MMs realize the ground state of the system, provided that the self-attraction in the two components is, respectively, stronger or weaker than the cross attraction between them. The SVs and MMs which are not the ground states are subject to a drift instability. In free space (in the absence of the HO trap), modes of both types degenerate into unstable Townes solitons when their norms attain the respective critical values, while there is no lower existence threshold for the stable modes. Moving free-space stable solitons are also found in the present non-Galilean-invariant system, up to a critical velocity. Collisions between two moving solitons lead to their merger into a single one.

This paper addresses the problem of finite-time synchronization of tunnel diode based chaotic oscillators. After a brief investigation of its chaotic dynamics, we propose an active adaptive feedback coupling which accomplishes the synchronization of tunnel-diode-based chaotic systems with and without the presence of delay(s), basing ourselves on Lyapunov and on Krasovskii-Lyapunov stability theories. This feedback coupling could be applied to many other chaotic systems. A finite horizon can be arbitrarily established by ensuring that chaos synchronization is achieved at a pre-established time. An advantage of the proposed feedback coupling is that it is simple and easy to implement. Both mathematical investigations and numerical simulations followed by pspice experiment are presented to show the feasibility of the proposed method.

The interaction of flame and surrounding fluid motion is of central importance in the fundamental understanding of turbulent combustion. It is demonstrated here that this interaction can be represented using streamline segment analysis, which was previously applied in nonreactive turbulence. The present work focuses on the effects of the global Lewis number (Le) on streamline segment statistics in premixed flames in the thin-reaction-zones regime. A direct numerical simulation database of freely propagating thin-reaction-zones regime flames with Le ranging from $0.34$ to $1.2$ is used to demonstrate that Le has significant influences on the characteristic features of the streamline segment, such as the curve length, the difference in the velocity magnitude at two extremal points, and their correlations with the local flame curvature. The strengthenings of the dilatation rate, flame normal acceleration, and flame-generated turbulence with decreasing Le are principally responsible for these observed effects. An expression for the probability density function (pdf) of the streamline segment length, originally developed for nonreacting turbulent flows, captures the qualitative behavior for turbulent premixed flames in the thin-reaction-zones regime for a wide range of Le values. The joint pdfs between the streamline length and the difference in the velocity magnitude at two extremal points for both unweighted and density-weighted velocity vectors are analyzed and compared. Detailed explanations are provided for the observed differences in the topological behaviors of the streamline segment in response to the global Le.

In this paper, bulk stress distributions in the pore space of columns packed with spheres are numerically computed with lattice Boltzmann simulations. Three different ideally packed and one randomly packed configuration of the columns are considered under Darcy flow conditions. The stress distributions change when the packing type changes. In the Darcy regime, the normalized stress distribution for a particular packing type is independent of the pressure difference that drives the flow and presents a common pattern. The three parameter (3P) log-normal distribution is found to describe the stress distributions in the randomly packed beds within statistical accuracy. In addition, the 3P log-normal distribution is still valid when highly porous scaffold geometries rather than sphere beds are examined. It is also shown that the 3P log-normal distribution can describe the bulk stress distribution in consolidated reservoir rocks like Berea sandstone.