Recent Articles

Edge correlations and link prediction in growing hypergraphs

Xie He, Philip S. Chodrow, and Peter J. Mucha

Phys. Rev. E 112, 024305 (2025) - Published 25 August, 2025

Patterns robust to disorder in spatially interacting generalized Lotka-Volterra ecosystems

Alessandro Salvatore, Fabián Aguirre-López, and Ruben Zakine

Phys. Rev. E 112, 024306 (2025) - Published 25 August, 2025

Dynamics and frictional dissipation for treading slowly in a puddle

Chung-Hao Chen, Zong-Rou Jiang, and Tzay-Ming Hong

Phys. Rev. E 112, 025105 (2025) - Published 25 August, 2025

Falling viscoelastic liquid films on a slippery substrate

Zhiwei Song and Zijing Ding

Phys. Rev. E 112, 025106 (2025) - Published 25 August, 2025

Memory effect on gas percolation in saturated porous media

Germán Varas and Valérie Vidal

Phys. Rev. E 112, 025420 (2025) - Published 25 August, 2025

Nonlinear optical response of thermal origin of sunset yellow chromonic liquid crystal

P. S. Terceiro, F. L. S. Cuppo, Dennys Reis, and A. M. Figueiredo Neto

Phys. Rev. E 112, 025421 (2025) - Published 25 August, 2025

Geometry and dynamics of spring networks of spherical topology

Zhenwei Yao

Phys. Rev. E 112, 025504 (2025) - Published 25 August, 2025

Higher-order Ising model on hypergraphs

Thomas Robiglio, Leonardo Di Gaetano, Ada Altieri, Giovanni Petri, and Federico Battiston

Phys. Rev. E 112, L022301 (2025) - Published 25 August, 2025

Non-Markovian N-spin chain quantum battery in thermal charging process

Shun-Cai Zhao, Zi-Ran Zhao, and Ni-Ya Zhuang

Phys. Rev. E 112, 024129 (2025) - Published 22 August, 2025

Open quantum systems and the grand canonical ensemble

Benedikt M. Reible and Luigi Delle Site

Phys. Rev. E 112, 024130 (2025) - Published 22 August, 2025

Hybrid lattice Boltzmann method for multiphase flows

Thomas Gregorczyk, Song Zhao, and Pierre Boivin

Phys. Rev. E 112, 025311 (2025) - Published 22 August, 2025

Unsupervised classification of disordered patterns in an oppositely charged colloidal system

Yoshitaka Miyahara and Taiki Haga

Phys. Rev. E 112, 025419 (2025) - Published 22 August, 2025

Unification of stochastic and quantum thermodynamics in scalar field theory via a model with a Brownian thermostat

T. Koide and F. Nicacio

Phys. Rev. E 112, 024127 (2025) - Published 21 August, 2025

Finite-time blowup of a Brownian particle in a repulsive potential

P. L. Krapivsky and Baruch Meerson

Phys. Rev. E 112, 024128 (2025) - Published 21 August, 2025

Interplay between intraspecific suppression and environment in shaping biodiversity

Seong-Gyu Yang (양성규) and Hye Jin Park (박혜진)

Phys. Rev. E 112, 024304 (2025) - Published 21 August, 2025

Triggered and spontaneous dormancy in bacteria during feast-famine cycles with stochastic antibiotic application

Silja Borring Låstad and Namiko Mitarai

Phys. Rev. E 112, 024411 (2025) - Published 21 August, 2025

Integrating coarse-grained simulations and machine learning to uncover protein aging mechanisms

Yi-fan Wang, Chun-lai Ren, and Yu-qiang Ma

Phys. Rev. E 112, 024412 (2025) - Published 21 August, 2025

Aging of biomolecular condensates, a phenomenon increasingly recognized in recent experiments, is a multiscale phenomenon that can impact the condensate’s biological function. The authors employ coarse-grained simulations integrated with machine learning techniques to analyze structural and sequence-specific effects underlying the liquid-to-solid transition associated with the aging process.

#TimelyTopic #BiophysicsSpotlight

Quasilinear thermalization of collision-poor plasmas by noncollective fluctuations

R. Schlickeiser and M. Kröger

Phys. Rev. E 112, 025209 (2025) - Published 21 August, 2025

Polydispersity-driven dynamical differences between two- and three-dimensional supercooled liquids

Ilian Pihlajamaa, Lotte S. van Gessel, Corentin C. L. Laudicina, Luc J. van Burik, and Liesbeth M. C. Janssen

Phys. Rev. E 112, 025417 (2025) - Published 21 August, 2025

Contrary to existing assumptions, this study shows that particle-size-dependent relaxation dynamics in supercooled polydisperse liquids differ significantly between two and three dimensions. In three dimensions, small and large particles relax at distinct rates, while in two dimensions, their dynamics remain coupled, indicating a dimensional dependence in microscopic relaxation behavior.

#WellStructured #ClearMotivation #TechnicalAdvancement

Variational autoencoders understand knot topology

Anna Braghetto, Sumanta Kundu, Marco Baiesi, and Enzo Orlandini

Phys. Rev. E 112, 025418 (2025) - Published 21 August, 2025

Supervised machine learning methods are emerging as valid alternatives to standard mathematical methods for identifying knots in polymers. The authors demonstrate the ability of a hybrid supervised-generative machine learning algorithm to capture different topological features of entangled filaments and to exploit this knowledge to faithfully reconstruct or produce new knotted configurations without simulations.

#MachineLearningSpotlight #Interdisciplinary

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