Volume 86, Issue 3

September 2012

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HIGHLIGHTED ARTICLES

FEATURED IN PHYSICS

Nonlinear shallow ocean-wave soliton interactions on flat beaches

Mark J. Ablowitz and Douglas E. Baldwin

Phys. Rev. E 86, 036305 (2012) - Published 6 September, 2012

RAPID COMMUNICATIONS

Statistical physics

RAPID COMMUNICATION

Closed-loop liquid-vapor equilibrium in a one-component system

N. G. Almarza

Phys. Rev. E 86, 030101(R) (2012) - Published 5 September, 2012

RAPID COMMUNICATION

Criticality governed by the stable renormalization fixed point of the Ising model in the hierarchical small-world network

Tomoaki Nogawa, Takehisa Hasegawa, and Koji Nemoto

Phys. Rev. E 86, 030102(R) (2012) - Published 11 September, 2012

RAPID COMMUNICATION

Universality classes of transport in time-dependent random potentials

Yevgeny Krivolapov and Shmuel Fishman

Phys. Rev. E 86, 030103(R) (2012) - Published 24 September, 2012

Colloidal dispersions, suspensions, and aggregates

RAPID COMMUNICATION

Noninvasive measurement of dissipation in colloidal systems

B. Lander, J. Mehl, V. Blickle, C. Bechinger, and U. Seifert

Phys. Rev. E 86, 030401(R) (2012) - Published 20 September, 2012

Structured and complex fluids

RAPID COMMUNICATION

Dynamic scaling for anomalous transport in supercooled liquids

Akira Furukawa and Hajime Tanaka

Phys. Rev. E 86, 030501(R) (2012) - Published 5 September, 2012

RAPID COMMUNICATION

Cooperative heterogeneous facilitation: Multiple glassy states and glass-glass transition

Mauro Sellitto

Phys. Rev. E 86, 030502(R) (2012) - Published 14 September, 2012

Liquid crystals

RAPID COMMUNICATION

$\pm$ 1/2 wedge disclinations stabilized by a sinusoidal boundary in a thin hybrid nematic liquid-crystal film

Takuya Ohzono, Jun-ichi Fukuda, Kosuke Suzuki, and Tomohiko Yamaguchi

Phys. Rev. E 86, 030701(R) (2012) - Published 28 September, 2012

RAPID COMMUNICATION

Defect coalescence in spherical nematic shells

Teresa Lopez-Leon, Martin A. Bates, and Alberto Fernandez-Nieves

Phys. Rev. E 86, 030702(R) (2012) - Published 28 September, 2012

Biological physics

RAPID COMMUNICATION

Nucleation-induced transition to collective motion in active systems

Christoph A. Weber, Volker Schaller, Andreas R. Bausch, and Erwin Frey

Phys. Rev. E 86, 030901(R) (2012) - Published 26 September, 2012

ARTICLES

Statistical physics

Convergence to equilibrium under a random Hamiltonian

Fernando G. S. L. Brandão, Piotr Ćwikliński, Michał Horodecki, Paweł Horodecki, Jarosław K. Korbicz, and Marek Mozrzymas

Phys. Rev. E 86, 031101 (2012) - Published 4 September, 2012

Two-step condensation of the charged Bose gas

R. L. Delgado, P. Bargueño, and F. Sols

Phys. Rev. E 86, 031102 (2012) - Published 4 September, 2012

Geometric theory for Weibull's distribution

Iddo Eliazar

Phys. Rev. E 86, 031103 (2012) - Published 4 September, 2012

Stochastic noise in atomic force microscopy

Aleksander Labuda, Martin Lysy, William Paul, Yoichi Miyahara, Peter Grütter, Roland Bennewitz, and Mark Sutton

Phys. Rev. E 86, 031104 (2012) - Published 5 September, 2012

Narrow-escape-time problem: The imperfect trapping case

Félix Rojo, Horacio S. Wio, and Carlos E. Budde

Phys. Rev. E 86, 031105 (2012) - Published 5 September, 2012

Fluctuations of current in nonstationary diffusive lattice gases

P. L. Krapivsky and Baruch Meerson

Phys. Rev. E 86, 031106 (2012) - Published 5 September, 2012

Thermal conduction and interface effects in nanoscale Fermi-Pasta-Ulam conductors

K. Sääskilahti, J. Oksanen, R. P. Linna, and J. Tulkki

Phys. Rev. E 86, 031107 (2012) - Published 7 September, 2012

Generalized Hurst exponent and multifractal function of original and translated texts mapped into frequency and length time series

M. Ausloos

Phys. Rev. E 86, 031108 (2012) - Published 7 September, 2012

Paramagnetic and glass transitions in sudoku

A Williams and G. J. Ackland

Phys. Rev. E 86, 031109 (2012) - Published 7 September, 2012

Decay of unstable states driven by colored noise in an electromagnetic field

J. I. Jiménez-Aquino and M. Romero-Bastida

Phys. Rev. E 86, 031110 (2012) - Published 7 September, 2012

Diffusion in a soft confining environment: Dynamic effects of thermal fluctuations

Benoit Palmieri and Samuel A. Safran

Phys. Rev. E 86, 031111 (2012) - Published 10 September, 2012

Driving kinetically constrained models into nonequilibrium steady states: Structural and slow transport properties

Francesco Turci, Estelle Pitard, and Mauro Sellitto

Phys. Rev. E 86, 031112 (2012) - Published 10 September, 2012

Percolation transitions with nonlocal constraint

Pyoung-Seop Shim, Hyun Keun Lee, and Jae Dong Noh

Phys. Rev. E 86, 031113 (2012) - Published 10 September, 2012

$1 / m$ expansion in spin glasses and the de Almeida-Thouless line

M. A. Moore

Phys. Rev. E 86, 031114 (2012) - Published 10 September, 2012

Weighted correlation approach: An extended version with applications to the hard-sphere fluid

Zhao Wang and Longcheng Liu

Phys. Rev. E 86, 031115 (2012) - Published 11 September, 2012

Boolean decision problems with competing interactions on scale-free networks: Critical thermodynamics

Helmut G. Katzgraber, Katharina Janzen, and Creighton K. Thomas

Phys. Rev. E 86, 031116 (2012) - Published 12 September, 2012

Nonadiabatic entropy production for non-Markov dynamics

Reinaldo García-García

Phys. Rev. E 86, 031117 (2012) - Published 12 September, 2012

Structure of trajectories of complex-matrix eigenvalues in the Hermitian–non-Hermitian transition

O. Bohigas, J. X. De Carvalho, and M. P. Pato

Phys. Rev. E 86, 031118 (2012) - Published 14 September, 2012

von Neummann's and related scaling laws in rock-paper-scissors-type games

P. P. Avelino, D. Bazeia, L. Losano, and J. Menezes

Phys. Rev. E 86, 031119 (2012) - Published 14 September, 2012

Impact of structured heterogeneities on reactive two-phase porous flow

Daniel Reeves and Daniel H. Rothman

Phys. Rev. E 86, 031120 (2012) - Published 14 September, 2012

Dynamical heterogeneities as fingerprints of a backbone structure in Potts models

E. E. Ferrero, F. Romá, S. Bustingorry, and P. M. Gleiser

Phys. Rev. E 86, 031121 (2012) - Published 17 September, 2012

Matrix-valued Boltzmann equation for the Hubbard chain

Martin L. R. Fürst, Christian B. Mendl, and Herbert Spohn

Phys. Rev. E 86, 031122 (2012) - Published 18 September, 2012

Single-file diffusion in periodic energy landscapes: The role of hydrodynamic interactions

E. C. Euán-Díaz, V. R. Misko, F. M. Peeters, S. Herrera-Velarde, and R. Castañeda-Priego

Phys. Rev. E 86, 031123 (2012) - Published 18 September, 2012

Two-dimensional lattice liquid models

Yukitaka Ishimoto, Takahiro Murashima, Takashi Taniguchi, and Ryoichi Yamamoto

Phys. Rev. E 86, 031124 (2012) - Published 19 September, 2012

Scattering lengths and universality in superdiffusive Lévy materials

Raffaella Burioni, Serena di Santo, Stefano Lepri, and Alessandro Vezzani

Phys. Rev. E 86, 031125 (2012) - Published 20 September, 2012

Stochastic analysis of complex reaction networks using binomial moment equations

Baruch Barzel and Ofer Biham

Phys. Rev. E 86, 031126 (2012) - Published 20 September, 2012

Demonstration of Jarzynski's equality in open quantum systems using a stepwise pulling protocol

Van A. Ngo and Stephan Haas

Phys. Rev. E 86, 031127 (2012) - Published 20 September, 2012

Diffusive and subdiffusive dynamics of indoor microclimate: A time series modeling

Monika Maciejewska, Andrzej Szczurek, Grzegorz Sikora, and Agnieszka Wyłomańska

Phys. Rev. E 86, 031128 (2012) - Published 20 September, 2012

Depinning phase transition in the two-dimensional clock model with quenched randomness

X. P. Qin, B. Zheng, and N. J. Zhou

Phys. Rev. E 86, 031129 (2012) - Published 20 September, 2012

Ab initio simulation of transport phenomena in rarefied gases

Felix Sharipov and José L. Strapasson

Phys. Rev. E 86, 031130 (2012) - Published 21 September, 2012

Effect of external fields in Axelrod's model of social dynamics

Lucas R. Peres and José F. Fontanari

Phys. Rev. E 86, 031131 (2012) - Published 21 September, 2012

Role of the on-site pinning potential in establishing quasi-steady-state conditions of heat transport in finite quantum systems

Eduardo C. Cuansing, Huanan Li, and Jian-Sheng Wang

Phys. Rev. E 86, 031132 (2012) - Published 24 September, 2012

Conditions under which a superdiffusive random-search strategy is necessary

S. A. Sotelo-López, M. C. Santos, E. P. Raposo, G. M. Viswanathan, and M. G. E. da Luz

Phys. Rev. E 86, 031133 (2012) - Published 24 September, 2012

Nonlinear driven diffusive systems with dissipation: Fluctuating hydrodynamics

A. Prados, A. Lasanta, and Pablo I. Hurtado

Phys. Rev. E 86, 031134 (2012) - Published 24 September, 2012

High-activity perturbation expansion for the hard square lattice gas

Kabir Ramola and Deepak Dhar

Phys. Rev. E 86, 031135 (2012) - Published 24 September, 2012

Moments of action provide insight into critical times for advection-diffusion-reaction processes

Adam J. Ellery, Matthew J. Simpson, Scott W. McCue, and Ruth E. Baker

Phys. Rev. E 86, 031136 (2012) - Published 25 September, 2012

Information geometry and quantum phase transitions in the Dicke model

Anshuman Dey, Subhash Mahapatra, Pratim Roy, and Tapobrata Sarkar

Phys. Rev. E 86, 031137 (2012) - Published 25 September, 2012

Heat conduction in systems with Kolmogorov-Arnold-Moser phase space structure

I. F. Herrera-González, H. I. Pérez-Aguilar, A. Mendoza-Suárez, and E. S. Tututi

Phys. Rev. E 86, 031138 (2012) - Published 25 September, 2012

Unusual shock wave in two-species driven systems with an umbilic point

Vladislav Popkov and Gunter M. Schütz

Phys. Rev. E 86, 031139 (2012) - Published 25 September, 2012

Social climber attachment in forming networks produces a phase transition in a measure of connectivity

Dane Taylor and Daniel B. Larremore

Phys. Rev. E 86, 031140 (2012) - Published 26 September, 2012

Referring to the social performance promotes cooperation in spatial prisoner's dilemma games

Keizo Shigaki, Jun Tanimoto, Zhen Wang, Satoshi Kokubo, Aya Hagishima, and Naoki Ikegaya

Phys. Rev. E 86, 031141 (2012) - Published 26 September, 2012

Fast fixation with a generic network structure

Gareth J. Baxter, Richard A. Blythe, and Alan J. McKane

Phys. Rev. E 86, 031142 (2012) - Published 26 September, 2012

First passages in bounded domains: When is the mean first passage time meaningful?

Thiago G. Mattos, Carlos Mejía-Monasterio, Ralf Metzler, and Gleb Oshanin

Phys. Rev. E 86, 031143 (2012) - Published 27 September, 2012

Finite-temperature and finite-time scaling of the directed polymer free energy with respect to its geometrical fluctuations

Elisabeth Agoritsas, Sebastian Bustingorry, Vivien Lecomte, Grégory Schehr, and Thierry Giamarchi

Phys. Rev. E 86, 031144 (2012) - Published 27 September, 2012

Large rare fluctuations in systems with delayed dissipation

M. I. Dykman and I. B. Schwartz

Phys. Rev. E 86, 031145 (2012) - Published 28 September, 2012

Balance between absorbing and positive fixed points in resource consumption models

Hilla Behar, Nadav Shnerb, and Yoram Louzoun

Phys. Rev. E 86, 031146 (2012) - Published 28 September, 2012

Granular materials

Flow-induced shear instabilities of cohesive granulates

Ilenia Battiato and Jürgen Vollmer

Phys. Rev. E 86, 031301 (2012) - Published 6 September, 2012

Maximally dense packings of two-dimensional convex and concave noncircular particles

Steven Atkinson, Yang Jiao, and Salvatore Torquato

Phys. Rev. E 86, 031302 (2012) - Published 10 September, 2012

Discrete simulation of dense flows of polyhedral grains down a rough inclined plane

Emilien Azéma, Yannick Descantes, Nicolas Roquet, Jean-Noël Roux, and François Chevoir

Phys. Rev. E 86, 031303 (2012) - Published 20 September, 2012

Internal energy fluctuations of a granular gas under steady uniform shear flow

J. Javier Brey, M. I. García de Soria, and P. Maynar

Phys. Rev. E 86, 031304 (2012) - Published 20 September, 2012

Effects of weak disorder on stress-wave anisotropy in centered square nonlinear granular crystals

A. Leonard, C. Daraio, A. Awasthi, and P. Geubelle

Phys. Rev. E 86, 031305 (2012) - Published 21 September, 2012

Flow and clogging in a silo with an obstacle above the orifice

Celia Lozano, Alvaro Janda, Angel Garcimartín, Diego Maza, and Iker Zuriguel

Phys. Rev. E 86, 031306 (2012) - Published 26 September, 2012

Shape effects on the random-packing density of tetrahedral particles

Jian Zhao, Shuixiang Li, Weiwei Jin, and Xuan Zhou

Phys. Rev. E 86, 031307 (2012) - Published 26 September, 2012

Stability, deformation, and variability of granular fills composed of polyhedral particles

Juan Carlos Quezada, Pierre Breul, Gilles Saussine, and Farhang Radjai

Phys. Rev. E 86, 031308 (2012) - Published 28 September, 2012

Colloidal dispersions, suspensions, and aggregates

Dynamical configurations and bistability of helical nanostructures under external torque

Arijit Ghosh, Debadrita Paria, Haobijam Johnson Singh, Pooyath Lekshmy Venugopalan, and Ambarish Ghosh

Phys. Rev. E 86, 031401 (2012) - Published 14 September, 2012

Amorphous to amorphous transition in particle rafts

Atul Varshney, A. Sane, Shankar Ghosh, and S. Bhattacharya

Phys. Rev. E 86, 031402 (2012) - Published 26 September, 2012

Structural responses of quasi-two-dimensional colloidal fluids to excitations elicited by nonequilibrium perturbations

Jelena Pesic, Joseph Zsolt Terdik, Xinliang Xu, Ye Tian, Alejandro Lopez, Stuart A. Rice, Aaron R. Dinner, and Norbert F. Scherer

Phys. Rev. E 86, 031403 (2012) - Published 28 September, 2012

Structured and complex fluids

Scaling of volumetric data in model systems based on the Lennard-Jones potential

A. Grzybowski, K. Koperwas, and M. Paluch

Phys. Rev. E 86, 031501 (2012) - Published 4 September, 2012

Finite-size effects in the dynamics of glass-forming liquids

Ludovic Berthier, Giulio Biroli, Daniele Coslovich, Walter Kob, and Cristina Toninelli

Phys. Rev. E 86, 031502 (2012) - Published 10 September, 2012

Hydration and anomalous solubility of the Bell-Lavis model as solvent

Marcia M. Szortyka, Carlos E. Fiore, Marcia C. Barbosa, and Vera B. Henriques

Phys. Rev. E 86, 031503 (2012) - Published 12 September, 2012

Spatial inhomogeneities in ionic liquids, charged proteins, and charge stabilized colloids from collective variables theory

O. Patsahan and A. Ciach

Phys. Rev. E 86, 031504 (2012) - Published 17 September, 2012

Critical scaling of a jammed system after a quench of temperature

Michio Otsuki and Hisao Hayakawa

Phys. Rev. E 86, 031505 (2012) - Published 25 September, 2012

Impact of water on molecular dynamics of amorphous $α$ -, $β$ -, and $γ$ -cyclodextrins studied by dielectric spectroscopy

K. Kaminski, K. Adrjanowicz, E. Kaminska, K. Grzybowska, L. Hawelek, M. Paluch, M. Tarnacka, I. Gruszka, and A. Kasprzycka

Phys. Rev. E 86, 031506 (2012) - Published 27 September, 2012

Films, interfaces, and crystal growth

Phase behavior and structure of a fluid confined between competing (solvophobic and solvophilic) walls

M. C. Stewart and R. Evans

Phys. Rev. E 86, 031601 (2012) - Published 12 September, 2012

Perturbation theory of solid-liquid interfacial free energies of bcc metals

Vadim B. Warshavsky and Xueyu Song

Phys. Rev. E 86, 031602 (2012) - Published 18 September, 2012

Solidification fronts in supercooled liquids: How rapid fronts can lead to disordered glassy solids

A. J. Archer, M. J. Robbins, U. Thiele, and E. Knobloch

Phys. Rev. E 86, 031603 (2012) - Published 21 September, 2012

Spontaneous wrinkle branching by gradient stiffness

Yong Ni, Dong Yang, and Linghui He

Phys. Rev. E 86, 031604 (2012) - Published 24 September, 2012

Liquid crystals

Influence of an external field on the surface tension of free-standing smectic films

A. V. Zakharov and A. A. Vakunenko

Phys. Rev. E 86, 031701 (2012) - Published 7 September, 2012

Propagation of electromagnetic waves in stochastic helical media

David Mendez and J. Adrian Reyes

Phys. Rev. E 86, 031702 (2012) - Published 13 September, 2012

Relativistic Lagrangian model of a nematic liquid crystal interacting with an electromagnetic field

Yuri N. Obukhov, Tomás Ramos, and Guillermo F. Rubilar

Phys. Rev. E 86, 031703 (2012) - Published 17 September, 2012

Anisotropic self-diffusion in nematic, smectic- $A$ , and reentrant nematic phases

Sergey V. Dvinskikh and István Furó

Phys. Rev. E 86, 031704 (2012) - Published 18 September, 2012

Piezoelectric and flexoelectric effects in ferroelectric liquid crystals

E. V. Popova, E. I. Kopeychenko, A. I. Krivoshey, V. V. Vashchenko, and A. P. Fedoryako

Phys. Rev. E 86, 031705 (2012) - Published 27 September, 2012

Polymers

Analytic theory of the interactions between nanocolloids mediated by reversibly adsorbed polymers

A. I. Chervanyov and G. Heinrich

Phys. Rev. E 86, 031801 (2012) - Published 4 September, 2012

Concentration dependence of rheological properties of telechelic associative polymer solutions

Takashi Uneyama, Shinya Suzuki, and Hiroshi Watanabe

Phys. Rev. E 86, 031802 (2012) - Published 6 September, 2012

Chain conformation of ring polymers under a cylindrical nanochannel confinement

Junfang Sheng and Kaifu Luo

Phys. Rev. E 86, 031803 (2012) - Published 17 September, 2012

Directional motion of forced polymer chains with hydrodynamic interaction

D. Santos-Oliván, A. Fiasconaro, and F. Falo

Phys. Rev. E 86, 031804 (2012) - Published 24 September, 2012

Universal properties of knotted polymer rings

M. Baiesi and E. Orlandini

Phys. Rev. E 86, 031805 (2012) - Published 25 September, 2012

Morphological control of grafted polymer films via attraction to small nanoparticle inclusions

Michael G. Opferman, Rob D. Coalson, David Jasnow, and Anton Zilman

Phys. Rev. E 86, 031806 (2012) - Published 26 September, 2012

Biological physics

Free-energy calculations along a high-dimensional fragmented path with constrained dynamics

Changjun Chen, Yanzhao Huang, and Yi Xiao

Phys. Rev. E 86, 031901 (2012) - Published 4 September, 2012

Effect of hydrogen bond interaction on protein phase transition

Hon-Wai Leong and Lock Yue Chew

Phys. Rev. E 86, 031902 (2012) - Published 4 September, 2012

Macroscopic limits of individual-based models for motile cell populations with volume exclusion

Louise Dyson, Philip K. Maini, and Ruth E. Baker

Phys. Rev. E 86, 031903 (2012) - Published 5 September, 2012

Surface traction and the dynamics of elastic rods at low Reynolds number

Eva M. Strawbridge and Charles W. Wolgemuth

Phys. Rev. E 86, 031904 (2012) - Published 5 September, 2012

Limit-cycle oscillations and stable patterns in repressor lattices

Sagar Chakraborty, Mogens H. Jensen, Sandeep Krishna, Benedicte Mengel Pers, Simone Pigolotti, Vedran Sekara, and Szabolcs Semsey

Phys. Rev. E 86, 031905 (2012) - Published 7 September, 2012

Membrane-mediated interactions between rigid inclusions: An effective field theory

Cem Yolcu and Markus Deserno

Phys. Rev. E 86, 031906 (2012) - Published 7 September, 2012

Distributions of lifetime and maximum size of abortive clathrin-coated pits

Anand Banerjee, Alexander Berezhkovskii, and Ralph Nossal

Phys. Rev. E 86, 031907 (2012) - Published 7 September, 2012

Stick-slip motion and elastic coupling in crawling cells

Alex J. Loosley and Jay X. Tang

Phys. Rev. E 86, 031908 (2012) - Published 10 September, 2012

Finding multiple minimum-energy conformations of the hydrophobic-polar protein model via multidomain sampling

Wei Tang and Qing Zhou

Phys. Rev. E 86, 031909 (2012) - Published 11 September, 2012

First-passage-probability analysis of active transport in live cells

David A. Kenwright, Andrew W. Harrison, Thomas A. Waigh, Philip G. Woodman, and Victoria J. Allan

Phys. Rev. E 86, 031910 (2012) - Published 11 September, 2012

Two-pool model of cooperative vesicular transport

Paul C. Bressloff

Phys. Rev. E 86, 031911 (2012) - Published 13 September, 2012

Termination of pinned vortices by high-frequency wave trains in heartlike excitable media with anisotropic fiber orientation

Marcel Hörning

Phys. Rev. E 86, 031912 (2012) - Published 14 September, 2012

Absolute cross section for low-energy-electron damage to condensed macromolecules: A case study of DNA

Mohammad Rezaee, Pierre Cloutier, Andrew D. Bass, Marc Michaud, Darel J. Hunting, and Léon Sanche

Phys. Rev. E 86, 031913 (2012) - Published 14 September, 2012

Influence of polymer-pore interaction on the translocation of a polymer through a nanopore

Meng-Bo Luo and Wei-Ping Cao

Phys. Rev. E 86, 031914 (2012) - Published 14 September, 2012

Structural propensities and entropy effects in peptide helix-coil transitions

Ilan E. Chemmama, Adam Colt Pelea, Yuba R. Bhandari, Prem P. Chapagain, and Bernard S. Gerstman

Phys. Rev. E 86, 031915 (2012) - Published 17 September, 2012

Mathematical modeling of genome replication

Renata Retkute, Conrad A. Nieduszynski, and Alessandro de Moura

Phys. Rev. E 86, 031916 (2012) - Published 17 September, 2012

Langevin dynamics modeling of the water diffusion tensor in partially aligned collagen networks

Sean K. Powell and Konstantin I. Momot

Phys. Rev. E 86, 031917 (2012) - Published 17 September, 2012

Reanalysis of the hydrodynamic theory of fluid, polar-ordered flocks

John Toner

Phys. Rev. E 86, 031918 (2012) - Published 20 September, 2012

Relation between the change in DNA elasticity on ligand binding and the binding energetics

Viktor V. Kostjukov and Maxim P. Evstigneev

Phys. Rev. E 86, 031919 (2012) - Published 20 September, 2012

Biological evolution in a multidimensional fitness landscape

David B. Saakian, Zara Kirakosyan, and Chin-Kun Hu

Phys. Rev. E 86, 031920 (2012) - Published 20 September, 2012

Experimental determination of Philodendron melinonii and Arabidopsis thaliana tissue microstructure and geometric modeling via finite-edge centroidal Voronoi tessellation

Tanvir R. Faisal, Nicolay Hristozov, Alejandro D. Rey, Tamara L. Western, and Damiano Pasini

Phys. Rev. E 86, 031921 (2012) - Published 26 September, 2012

Effects of quantum coherence in metalloprotein electron transfer

Ross Dorner, John Goold, Libby Heaney, Tristan Farrow, and Vlatko Vedral

Phys. Rev. E 86, 031922 (2012) - Published 26 September, 2012

Random pinning limits the size of membrane adhesion domains

Thomas Speck and Richard L. C. Vink

Phys. Rev. E 86, 031923 (2012) - Published 27 September, 2012

Group-size distribution of skeins of wild geese

Yoshinori Hayakawa and Sho Furuhashi

Phys. Rev. E 86, 031924 (2012) - Published 27 September, 2012

BRIEF REPORTS

Statistical physics

Superdiffusive comb: Application to experimental observation of anomalous diffusion in one dimension

Alexander Iomin

Phys. Rev. E 86, 032101 (2012) - Published 4 September, 2012

Motion-dependent levels of order in a relativistic universe

B. Roy Frieden and Michael Petri

Phys. Rev. E 86, 032102 (2012) - Published 5 September, 2012

Cluster-size heterogeneity in the two-dimensional Ising model

Woo Seong Jo, Su Do Yi, Seung Ki Baek, and Beom Jun Kim

Phys. Rev. E 86, 032103 (2012) - Published 10 September, 2012

First-passage time: Lattice versus continuum

Kamal Sharma and N. Kumar

Phys. Rev. E 86, 032104 (2012) - Published 11 September, 2012

Thermal-insulating effect in a quantum harmonic chain with alternating masses

Leonardo M. Santana and Emmanuel Pereira

Phys. Rev. E 86, 032105 (2012) - Published 24 September, 2012

Efficiency, power, and period at two optimum operations of a thermoelectric single-level quantum dot

Fitsum Borga, Mulugeta Bekele, Yergou B. Tatek, and Mesfin Tsige

Phys. Rev. E 86, 032106 (2012) - Published 26 September, 2012

Polymers

Symmetric and asymmetric instability of buried polymer interfaces

J. P. de Silva, F. Cousin, A. R. Wildes, M. Geoghegan, and M. Sferrazza

Phys. Rev. E 86, 032801 (2012) - Published 25 September, 2012

Biological physics

Estimating the value of containment strategies in delaying the arrival time of an influenza pandemic: A case study of travel restriction and patient isolation

Lin Wang, Yan Zhang, Tianyi Huang, and Xiang Li

Phys. Rev. E 86, 032901 (2012) - Published 24 September, 2012

Dynamical model for the full stretching curve of DNA

Alessandro Fiasconaro and Fernando Falo

Phys. Rev. E 86, 032902 (2012) - Published 24 September, 2012

RAPID COMMUNICATIONS

Fluid dynamics

RAPID COMMUNICATION

Clustering of finite-size particles in turbulence

L. Fiabane, R. Zimmermann, R. Volk, J.-F. Pinton, and M. Bourgoin

Phys. Rev. E 86, 035301(R) (2012) - Published 21 September, 2012

RAPID COMMUNICATION

Reflectional symmetry breaking of the separated flow over three-dimensional bluff bodies

Mathieu Grandemange, Olivier Cadot, and Marc Gohlke

Phys. Rev. E 86, 035302(R) (2012) - Published 27 September, 2012

Classical physics

RAPID COMMUNICATION

Contact between representative rough surfaces

Vladislav A. Yastrebov, Guillaume Anciaux, and Jean-François Molinari

Phys. Rev. E 86, 035601(R) (2012) - Published 14 September, 2012

ARTICLES

Interdisciplinary physics

Risk-driven migration and the collective-risk social dilemma

Xiaojie Chen, Attila Szolnoki, and Matjaž Perc

Phys. Rev. E 86, 036101 (2012) - Published 7 September, 2012

Microscale simulation and numerical upscaling of a reactive flow in a plane channel

G. M. Porta, J.-F. Thovert, M. Riva, A. Guadagnini, and P. M. Adler

Phys. Rev. E 86, 036102 (2012) - Published 10 September, 2012

Analysis of complex contagions in random multiplex networks

Osman Yağan and Virgil Gligor

Phys. Rev. E 86, 036103 (2012) - Published 10 September, 2012

Taxonomies of networks from community structure

Jukka-Pekka Onnela, Daniel J. Fenn, Stephen Reid, Mason A. Porter, Peter J. Mucha, Mark D. Fricker, and Nick S. Jones

Phys. Rev. E 86, 036104 (2012) - Published 10 September, 2012

Collective decision dynamics in the presence of external drivers

Danielle S. Bassett, David L. Alderson, and Jean M. Carlson

Phys. Rev. E 86, 036105 (2012) - Published 11 September, 2012

Correlations in complex networks under attack

Animesh Srivastava, Bivas Mitra, Niloy Ganguly, and Fernando Peruani

Phys. Rev. E 86, 036106 (2012) - Published 11 September, 2012

Metabolic network modularity arising from simple growth processes

Kazuhiro Takemoto

Phys. Rev. E 86, 036107 (2012) - Published 11 September, 2012

Spreading of multiple epidemics with cross immunization

Florian Uekermann and Kim Sneppen

Phys. Rev. E 86, 036108 (2012) - Published 13 September, 2012

Exploring complex networks via topological embedding on surfaces

Tomaso Aste, Ruggero Gramatica, and T. Di Matteo

Phys. Rev. E 86, 036109 (2012) - Published 14 September, 2012

Opinion formation in time-varying social networks: The case of the naming game

Suman Kalyan Maity, T. Venkat Manoj, and Animesh Mukherjee

Phys. Rev. E 86, 036110 (2012) - Published 14 September, 2012

Bouchaud-Mézard model on a random network

Takashi Ichinomiya

Phys. Rev. E 86, 036111 (2012) - Published 17 September, 2012

Junctions and spiral patterns in generalized rock-paper-scissors models

P. P. Avelino, D. Bazeia, L. Losano, J. Menezes, and B. F. Oliveira

Phys. Rev. E 86, 036112 (2012) - Published 17 September, 2012

Propagation speed of a starting wave in a queue of pedestrians

Akiyasu Tomoeda, Daichi Yanagisawa, Takashi Imamura, and Katsuhiro Nishinari

Phys. Rev. E 86, 036113 (2012) - Published 19 September, 2012

Strategy to suppress epidemic explosion in heterogeneous metapopulation networks

Chuansheng Shen, Hanshuang Chen, and Zhonghuai Hou

Phys. Rev. E 86, 036114 (2012) - Published 24 September, 2012

Stability of Boolean multilevel networks

Emanuele Cozzo, Alex Arenas, and Yamir Moreno

Phys. Rev. E 86, 036115 (2012) - Published 25 September, 2012

Exploring the low-energy landscape of large-scale signed social networks

G. Facchetti, G. Iacono, and C. Altafini

Phys. Rev. E 86, 036116 (2012) - Published 26 September, 2012

Epidemic spreading with information-driven vaccination

Zhongyuan Ruan, Ming Tang, and Zonghua Liu

Phys. Rev. E 86, 036117 (2012) - Published 27 September, 2012

Chaos and pattern formation

Effects of translational coupling on dissipative localized states

F. del Campo, F. Haudin, R. G. Rojas, U. Bortolozzo, M. G. Clerc, and S. Residori

Phys. Rev. E 86, 036201 (2012) - Published 4 September, 2012

Local nature and scaling of chaos in weakly nonlinear disordered chains

D. M. Basko

Phys. Rev. E 86, 036202 (2012) - Published 5 September, 2012

Stickiness in a bouncer model: A slowing mechanism for Fermi acceleration

André L. P. Livorati, Tiago Kroetz, Carl P. Dettmann, Iberê Luiz Caldas, and Edson D. Leonel

Phys. Rev. E 86, 036203 (2012) - Published 6 September, 2012

Noise-induced synchronization in small world networks of phase oscillators

Reihaneh Kouhi Esfahani, Farhad Shahbazi, and Keivan Aghababaei Samani

Phys. Rev. E 86, 036204 (2012) - Published 6 September, 2012

Scroll wave filaments self-wrap around unexcitable heterogeneities

Zulma A. Jiménez and Oliver Steinbock

Phys. Rev. E 86, 036205 (2012) - Published 6 September, 2012

Effective transport barriers in nontwist systems

J. D. Szezech, Jr., I. L. Caldas, S. R. Lopes, P. J. Morrison, and R. L. Viana

Phys. Rev. E 86, 036206 (2012) - Published 7 September, 2012

Linear stability analysis of first-order delayed car-following models on a ring

Antoine Tordeux, Michel Roussignol, and Sylvain Lassarre

Phys. Rev. E 86, 036207 (2012) - Published 12 September, 2012

Diffraction and tunneling in systems with mixed phase space

Akiyuki Ishikawa, Atushi Tanaka, Kensuke S. Ikeda, and Akira Shudo

Phys. Rev. E 86, 036208 (2012) - Published 13 September, 2012

Manifold learning approach for chaos in the dripping faucet

Hiromichi Suetani, Karin Soejima, Rei Matsuoka, Ulrich Parlitz, and Hiroki Hata

Phys. Rev. E 86, 036209 (2012) - Published 17 September, 2012

Stabilizing oscillation death by multicomponent coupling with mismatched delays

Wei Zou, D. V. Senthilkumar, Yang Tang, and Jürgen Kurths

Phys. Rev. E 86, 036210 (2012) - Published 20 September, 2012

Motion of rotating pairs in a hexagonal superlattice pattern within dielectric barrier discharge

Lifang Dong, Ben Li, Zhongkai Shen, Yongjie Wang, and Ning Lu

Phys. Rev. E 86, 036211 (2012) - Published 20 September, 2012

Random symmetry breaking and freezing in chaotic networks

Y. Peleg, W. Kinzel, and I. Kanter

Phys. Rev. E 86, 036212 (2012) - Published 21 September, 2012

Quantum versus classical dynamics in a driven barrier: The role of kinematic effects

P. K. Papachristou, E. Katifori, F. K. Diakonos, V. Constantoudis, and E. Mavrommatis

Phys. Rev. E 86, 036213 (2012) - Published 24 September, 2012

Estimation of noise parameters in dynamical system identification with Kalman filters

Frank Kwasniok

Phys. Rev. E 86, 036214 (2012) - Published 26 September, 2012

Nonlinear diffusion effects on biological population spatial patterns

Eduardo H. Colombo and Celia Anteneodo

Phys. Rev. E 86, 036215 (2012) - Published 27 September, 2012

Generalized synchronization in mutually coupled oscillators and complex networks

Olga I. Moskalenko, Alexey A. Koronovskii, Alexander E. Hramov, and Stefano Boccaletti

Phys. Rev. E 86, 036216 (2012) - Published 27 September, 2012

Fluid dynamics

Role of conductivity in the electrohydrodynamic patterning of air-liquid interfaces

P. Gambhire and R. M. Thaokar

Phys. Rev. E 86, 036301 (2012) - Published 4 September, 2012

Anomalous scaling of a passive scalar field near two dimensions

A. V. Gladyshev, E. Jurčišinová, M. Jurčišin, R. Remecký, and P. Zalom

Phys. Rev. E 86, 036302 (2012) - Published 4 September, 2012

Jet impact on a soap film

Geoffroy Kirstetter, Christophe Raufaste, and Franck Celestini

Phys. Rev. E 86, 036303 (2012) - Published 4 September, 2012

Cavitation dynamics and directional microbubble ejection induced by intense femtosecond laser pulses in liquids

D. Faccio, G. Tamošauskas, E. Rubino, J. Darginavičius, D. G. Papazoglou, S. Tzortzakis, A. Couairon, and A. Dubietis

Phys. Rev. E 86, 036304 (2012) - Published 5 September, 2012

FEATURED IN PHYSICS

Nonlinear shallow ocean-wave soliton interactions on flat beaches

Mark J. Ablowitz and Douglas E. Baldwin

Phys. Rev. E 86, 036305 (2012) - Published 6 September, 2012

Effects of forcing geometry on two-dimensional weak turbulence

Yang Liao, Douglas H. Kelley, and Nicholas T. Ouellette

Phys. Rev. E 86, 036306 (2012) - Published 10 September, 2012

Long-time properties of magnetohydrodynamic turbulence and the role of symmetries

Julia E. Stawarz, Annick Pouquet, and Marc-Etienne Brachet

Phys. Rev. E 86, 036307 (2012) - Published 10 September, 2012

Chaotic gas turbine subject to augmented Lorenz equations

Kenichiro Cho, Takaya Miyano, and Toshiyuki Toriyama

Phys. Rev. E 86, 036308 (2012) - Published 10 September, 2012

Jets and sprays arising from a spark-induced oscillating bubble near a plate with a hole

Badarinath Karri, Siew-Wan Ohl, Evert Klaseboer, Claus-Dieter Ohl, and Boo Cheong Khoo

Phys. Rev. E 86, 036309 (2012) - Published 12 September, 2012

Electrohydrodynamics of a liquid drop in confined domains

Asghar Esmaeeli and Ali Behjatian

Phys. Rev. E 86, 036310 (2012) - Published 17 September, 2012

Macroscopic description of nonequilibrium effects in thermal transpiration flows in annular microchannels

Peyman Taheri and Majid Bahrami

Phys. Rev. E 86, 036311 (2012) - Published 17 September, 2012

Subcritical transition to turbulence: What we can learn from the physics of glasses

Olivier Dauchot and Eric Bertin

Phys. Rev. E 86, 036312 (2012) - Published 19 September, 2012

Viscosity calculation of a nanoparticle suspension confined in nanochannels

Yan Wang, Pawel Keblinski, and Zhenqian Chen

Phys. Rev. E 86, 036313 (2012) - Published 19 September, 2012

ac electric fields drive steady flows in flames

Aaron M. Drews, Ludovico Cademartiri, Michael L. Chemama, Michael P. Brenner, George M. Whitesides, and Kyle J. M. Bishop

Phys. Rev. E 86, 036314 (2012) - Published 20 September, 2012

Directional motion of impacting drops on dual-textured surfaces

V. Vaikuntanathan and D. Sivakumar

Phys. Rev. E 86, 036315 (2012) - Published 20 September, 2012

Taylor dispersion with adsorption and desorption

Maximilien Levesque, Olivier Bénichou, Raphaël Voituriez, and Benjamin Rotenberg

Phys. Rev. E 86, 036316 (2012) - Published 20 September, 2012

Microfluidic breakups of confined droplets against a linear obstacle: The importance of the viscosity contrast

Louis Salkin, Laurent Courbin, and Pascal Panizza

Phys. Rev. E 86, 036317 (2012) - Published 21 September, 2012

Predicting enhanced mass flow rates in gas microchannels using nonkinetic models

S. Kokou Dadzie and Howard Brenner

Phys. Rev. E 86, 036318 (2012) - Published 21 September, 2012

Anisotropy and nonuniversality in scaling laws of the large-scale energy spectrum in rotating turbulence

Amrik Sen, Pablo D. Mininni, Duane Rosenberg, and Annick Pouquet

Phys. Rev. E 86, 036319 (2012) - Published 21 September, 2012

Bubble dynamics and sonoluminescence from helium or xenon in mercury and water

Kyuichi Yasui and Kazumi Kato

Phys. Rev. E 86, 036320 (2012) - Published 26 September, 2012

Clustering of inelastic soft spheres in homogeneous turbulence

Thomas Burgener, Dirk Kadau, and Hans J. Herrmann

Phys. Rev. E 86, 036321 (2012) - Published 27 September, 2012

Plasma physics

Modeling of radiation losses in ultrahigh power laser-matter interaction

R. Capdessus, E. d'Humières, and V. T. Tikhonchuk

Phys. Rev. E 86, 036401 (2012) - Published 4 September, 2012

Head-on collisions of electrostatic solitons in nonthermal plasmas

Frank Verheest, Manfred A. Hellberg, and Willy A. Hereman

Phys. Rev. E 86, 036402 (2012) - Published 4 September, 2012

Coupling of detailed configuration kinetics and hydrodynamics in materials submitted to x-ray free-electron-laser irradiation

O. Peyrusse

Phys. Rev. E 86, 036403 (2012) - Published 4 September, 2012

Coulomb clusters of dust particles in a cusp magnetic trap under microgravity conditions

O. F. Petrov, M. I. Myasnikov, L. G. D’yachkov, M. M. Vasiliev, V. E. Fortov, S. F. Savin, A. Yu. Kaleri, A. I. Borisenko, and G. E. Morfill

Phys. Rev. E 86, 036404 (2012) - Published 6 September, 2012

Dynamics of plasma gratings in atomic and molecular gases

M. Durand, A. Jarnac, Y. Liu, B. Prade, A. Houard, V. Tikhonchuk, and A. Mysyrowicz

Phys. Rev. E 86, 036405 (2012) - Published 13 September, 2012

Negative energy waves and quantum relativistic Buneman instabilities

F. Haas, B. Eliasson, and P. K. Shukla

Phys. Rev. E 86, 036406 (2012) - Published 18 September, 2012

Electron-ion and ion-ion potentials for modeling warm dense matter: Applications to laser-heated or shock-compressed Al and Si

M. W. C. Dharma-wardana

Phys. Rev. E 86, 036407 (2012) - Published 19 September, 2012

Molecular dynamics method to locally resolve Poisson's ratio: Mechanical description of the solid--soft-matter interphase

Enrico Riccardi, Michael C. Böhm, and Florian Müller-Plathe

Phys. Rev. E 86, 036704 (2012) - Published 27 September, 2012

Kinetic Monte Carlo simulations for transient thermal fields: Computational methodology and application to the submicrosecond laser processes in implanted silicon

G. Fisicaro, L. Pelaz, P. Lopez, and A. La Magna

Phys. Rev. E 86, 036705 (2012) - Published 27 September, 2012

Nonlinear propagation of light in structured media: Generalized unidirectional pulse propagation equations

J. Andreasen and M. Kolesik

Phys. Rev. E 86, 036706 (2012) - Published 27 September, 2012

Calculating diffusion and permeability coefficients with the oscillating forward-reverse method

Bryan W. Holland, Chris G. Gray, and Bruno Tomberli

Phys. Rev. E 86, 036707 (2012) - Published 27 September, 2012

BRIEF REPORTS

Interdisciplinary physics

Degree correlations in random geometric graphs

A. Antonioni and M. Tomassini

Phys. Rev. E 86, 037101 (2012) - Published 28 September, 2012

Fluid dynamics

Stochastic resonance on the transverse displacement of swimmers in an oscillatory shear flow

Francisca Guzmán-Lastra and Rodrigo Soto

Phys. Rev. E 86, 037301 (2012) - Published 7 September, 2012

Classical physics

Localized pulses for the quintic derivative nonlinear Schrödinger equation on a continuous-wave background

C. Rogers and K. W. Chow

Phys. Rev. E 86, 037601 (2012) - Published 17 September, 2012

ERRATA

Publisher's Note: Susceptible-infected-susceptible model: A comparison of $N$ -intertwined and heterogeneous mean-field approximations [Phys. Rev. E 86, 026116 (2012)]

Cong Li, Ruud van de Bovenkamp, and Piet Van Mieghem

Phys. Rev. E 86, 039901 (2012) - Published 12 September, 2012

Erratum: Frequency discontinuity and amplitude death with time-delay asymmetry [Phys. Rev. E 85, 046204 (2012)]

Nirmal Punetha, Rajat Karnatak, Awadhesh Prasad, Jürgen Kurths, and Ram Ramaswamy

Phys. Rev. E 86, 039902 (2012) - Published 28 September, 2012