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  • Letter
  • Open Access

Nonlinear correlations underlie linear response and causality

Gabriele Di Antonio1,2,3,* and Gianni Valerio Vinci1,†

  • *Contact author: gabriele.diantonio@cref.it
  • †Contact author: gianni.vinci@iss.it

Phys. Rev. Research 7, L042029 – Published 31 October, 2025

DOI: https://doi.org/10.1103/vjvt-gdn1

Abstract

The inference of causal relationships among observed variables is a pivotal, long-standing problem in the scientific community. An intuitive method for quantifying these causal links involves examining the response of one variable to perturbations in another. The fluctuation-dissipation theorem elegantly connects this response to the correlation functions of the unperturbed system, thereby bridging the concepts of causality and correlation. However, this relationship becomes intricate in nonlinear systems, where knowledge of the invariant measure is required but elusive, especially in high-dimensional spaces. In this study, we establish a link between generalized correlation functions with the response function. This connection provides an alternative method for computing the inference of causal interactions, even when the invariant measure is unknown. We validate our theoretical framework by applying it to several nonlinear systems, showing convergence and consistency for increasing number of measured observables and samples. Finally, we discuss a significant interplay between the resulting causal network and the relevant timescales of the system.

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References (55)

  1. N. Wiener, The theory of prediction, in Modern Mathematics for the Engineer, edited by E. F. Beckenbach (McGraw-Hill, New York, 1956).
  2. C. W. Granger, Investigating causal relations by econometric models and cross-spectral methods, Econometrica 37, 424 (1969).
  3. X. S. Liang and R. Kleeman, Information transfer between dynamical system components, Phys. Rev. Lett. 95, 244101 (2005).
  4. X. S. Liang, Unraveling the cause-effect relation between time series, Phys. Rev. E 90, 052150 (2014).
  5. X. S. Liang, Normalized multivariate time series causality analysis and causal graph reconstruction, Entropy 23, 679 (2021).
  6. X. S. Liang, Information flow within stochastic dynamical systems, Phys. Rev. E 78, 031113 (2008).
  7. X. S. Liang, Information flow and causality as rigorous notions ab initio, Phys. Rev. E 94, 052201 (2016).
  8. H. Kantz and T. Schreiber, Nonlinear Time Series Analysis (Cambridge University Press, Cambridge, UK, 2003).
  9. J. Runge, A. Gerhardus, G. Varando, V. Eyring, and G. Camps-Valls, Causal inference for time series, Nat. Rev. Earth Environ. 4, 487 (2023).
  10. A. K. Seth, A. B. Barrett, and L. Barnett, Granger causality analysis in neuroscience and neuroimaging, J. Neurosci. 35, 3293 (2015).
  11. G. V. Vinci and R. Benzi, Economic complexity: Correlations between gross domestic product and fitness, Entropy 20, 766 (2018).
  12. M. A. Javarone, G. Di Antonio, G. V. Vinci, R. Cristodaro, C. J. Tessone, and L. Pietronero, Disorder unleashes panic in bitcoin dynamics, J. Phys.: Complexity 4, 045002 (2023).
  13. U. M. B. Marconi, A. Puglisi, L. Rondoni, and A. Vulpiani, Fluctuation–dissipation: Response theory in statistical physics, Phys. Rep. 461, 111 (2008).
  14. M. Baldovin, F. Cecconi, and A. Vulpiani, Understanding causation via correlations and linear response theory, Phys. Rev. Res. 2, 043436 (2020).
  15. M. Baldovin, F. Cecconi, A. Provenzale, and A. Vulpiani, Extracting causation from millennial-scale climate fluctuations in the last 800 kyr, Sci. Rep. 12, 15320 (2022).
  16. M. Baldovin, L. Caprini, and A. Vulpiani, Handy fluctuation-dissipation relation to approach generic noisy systems and chaotic dynamics, Phys. Rev. E 104, L032101 (2021).
  17. D. Lucente, A. Baldassarri, A. Puglisi, A. Vulpiani, and M. Viale, Inference of time irreversibility from incomplete information: Linear systems and its pitfalls, Phys. Rev. Res. 4, 043103 (2022).
  18. C. W. Rowley, I. Mezić, S. Bagheri, P. Schlatter, and D. S. Henningson, Spectral analysis of nonlinear flows, J. Fluid Mech. 641, 115 (2009).
  19. S. Klus, F. Nüske, S. Peitz, J.-H. Niemann, C. Clementi, and C. Schütte, Data-driven approximation of the Koopman generator: Model reduction, system identification, and control, Physica D 406, 132416 (2020).
  20. M. Santos Gutiérrez, V. Lucarini, M. D. Chekroun, and M. Ghil, Reduced-order models for coupled dynamical systems: Data-driven methods and the Koopman operator, Chaos 31, 053116 (2021).
  21. M. S. Gutiérrez and V. Lucarini, On some aspects of the response to stochastic and deterministic forcings, J. Phys. A: Math. Theor. 55, 425002 (2022).
  22. N. Zagli, M. Colbrook, V. Lucarini, I. Mezić, and J. Moroney, Bridging the gap between Koopmanism and response theory: Using natural variability to predict forced response, arXiv:2410.01622.
  23. V. Lucarini, Interpretable and equation-free response theory for complex systems, arXiv:2502.07908.
  24. C. Gardiner, Stochastic Methods (Springer, Berlin, 2009), Vol. 4.
  25. H. Risken, The Fokker-Planck Equation (Springer, Berlin, Heidelberg, 1996).
  26. G. V. Vinci and M. Mattia, Escape time in bistable neuronal populations driven by colored synaptic noise, Phys. Rev. Res. 7, 023172 (2025).
  27. B. Shizgal, Spectral Methods in Chemistry and Physics. Applications to Kinetic Theory and Quantum Mechanics. Scientific Computation (Springer, Dordrecht, 2015).
  28. M. O. Williams, I. G. Kevrekidis, and C. W. Rowley, A data-driven approximation of the Koopman operator: Extending dynamic mode decomposition, J. Nonlinear Sci. 25, 1307 (2015).
  29. M. J. Colbrook, L. J. Ayton, and M. Szőke, Residual dynamic mode decomposition: Robust and verified Koopmanism, J. Fluid Mech. 955, A21 (2023).
  30. M. J. Colbrook, B. Roman, and A. C. Hansen, How to compute spectra with error control, Phys. Rev. Lett. 122, 250201 (2019).
  31. U. C. Täuber, Critical Dynamics: A Field Theory Approach to Equilibrium and Non-Equilibrium Scaling Behavior (Cambridge University Press, Cambridge, UK, 2014).
  32. 〈f(x)〉=∫Df(x)p(x,t|x0)ps(x0)dxdx0.
  33. S. L. Brunton, M. Budišić, E. Kaiser, and J. N. Kutz, Modern Koopman theory for dynamical systems, SIAM Rev. 64, 229 (2022).
  34. C. Gardiner and P. Zoller, Quantum Noise: A Handbook of Markovian and Non-Markovian Quantum Stochastic Methods with Applications to Quantum Optics (Springer Science & Business Media, Cambridge, UK, 2004).
  35. S. Klus, A. Bittracher, I. Schuster, and C. Schütte, A kernel-based approach to molecular conformation analysis, J. Chem. Phys. 149, 244109 (2018).
  36. R. G. Ghanem and P. D. Spanos, Stochastic Finite Elements: A Spectral Approach (Springer, New York, NY, 2003).
  37. A. Vulpiani, F. Cecconi, and M. Cencini, Chaos: From Simple Models to Complex Systems. Series on Advances in Statistical Mechanics (World Scientific Publishing, Singapore, 2009).
  38. A. Namdari and Z. Li, A review of entropy measures for uncertainty quantification of stochastic processes, Adv. Mech. Eng. 11, 1687814019857350 (2019).
  39. We verified that our results hold also for the case of small noise ε∼0.1, but convergence requires almost double the number of dictionary functions, likely due the singular nature of the stationary measure.
  40. A. Treves, Mean-field analysis of neuronal spike dynamics, Network 4, 259 (1993).
  41. M. Mattia and P. Del Giudice, Population dynamics of interacting spiking neurons, Phys. Rev. E 66, 051917 (2002).
  42. H. Jaeger and H. Haas, Harnessing nonlinearity: Predicting chaotic systems and saving energy in wireless communication, Science 304, 78 (2004).
  43. J. Pathak, B. Hunt, M. Girvan, Z. Lu, and E. Ott, Model-free prediction of large spatiotemporally chaotic systems from data: A reservoir computing approach, Phys. Rev. Lett. 120, 024102 (2018).
  44. G. Di Antonio, T. Gili, A. Gabrielli, and M. Mattia, Linearizing and forecasting: A reservoir computing route to digital twins of the brain, bioRxiv 2025.
  45. B. O. Koopman, Hamiltonian systems and transformation in Hilbert space, Proc. Natl. Acad. Sci. USA 17, 315 (1931).
  46. J. von Neumann, Zur operatorenmethode in der klassischen mechanik, Ann. Math. 33, 587 (1932).
  47. M. Budišić, R. Mohr, and I. Mezić, Applied Koopmanism, Chaos 22, 047510 (2012).
  48. C. Capone, G. Gigante, and P. Del Giudice, Spontaneous activity emerging from an inferred network model captures complex spatio-temporal dynamics of spike data, Sci. Rep. 8, 17056 (2018).
  49. B. Lusch, J. N. Kutz, and S. L. Brunton, Deep learning for universal linear embeddings of nonlinear dynamics, Nat. Commun. 9, 4950 (2018).
  50. D. J. Alford-Lago, C. W. Curtis, A. T. Ihler, and O. Issan, Deep learning enhanced dynamic mode decomposition, Chaos 32, 033116 (2022).
  51. S. E. Otto and C. W. Rowley, Linearly recurrent autoencoder networks for learning dynamics, SIAM J. Appl. Dyn. Syst. 18, 558 (2019).
  52. D. T. Hristopulos, A. Babul, S. Babul, L. R. Brucar, and N. Virji-Babul, Disrupted information flow in resting-state in adolescents with sports related concussion, Front. Hum. Neurosci. 13, 419 (2019).
  53. A. Stips, D. Macias, C. Coughlan, E. Garcia-Gorriz, and X. S. Liang, On the causal structure between CO2 and global temperature, Sci. Rep. 6, 21691 (2016).
  54. B. Yi and S. Bose, Quantum Liang information flow as causation quantifier, Phys. Rev. Lett. 129, 020501 (2022).
  55. C. A. Pires, D. Docquier, and S. Vannitsem, A general theory to estimate information transfer in nonlinear systems, Physica D 458, 133988 (2024).

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