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Quantifying collective motion in living matter with spatial correlation functions

Hongmei Xu* and Yucheng Huo

K. Jimmy Hsia†

Endao Han‡

  • *Contact author: hongmei001@e.ntu.edu.sg
  • †Contact author: kjhsia@ntu.edu.sg
  • ‡Contact author: endao.han@ntu.edu.sg

Phys. Rev. Research 8, 033179 – Published 12 August, 2026

DOI: https://doi.org/10.1103/6zq7-33zc

Abstract

Active and living matter exhibits a wide range of complex phenomena, including collective motion, pattern formation, and hierarchical structures. Collective motion in living systems is often quantified using spatial correlation functions; however, competing definitions—especially for velocity fields—yield inconsistent results across studies. Here, we clarify the distinction between “normalize-first” and “average-first” velocity correlations, and establish a robust and practical framework for computing correlation functions and extracting director and velocity correlation lengths, ξd and ξv, respectively, from a wide range of active cell systems. Using synthetic shear and vortex fields and experimental datasets spanning epithelial monolayers, neural progenitors, and bacterial colonies, we demonstrate how noise and fitting choices affect inferred length scales, and provide recipes that yield consistent outcomes. Finally, we introduce two state diagrams—ξv versus ξd and ξv/ξd versus motility anisotropy—that locate systems within different dynamical regimes and track their trajectories during development. These tools standardize correlation analysis and link single-cell motility to emergent colony-scale flows, enabling rigorous, comparable measurements across living systems.

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