Volume 100, Issue 6

December 2019

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HIGHLIGHTED ARTICLES

EDITORS' SUGGESTION

RAPID COMMUNICATION

From early nucleation past the percolation threshold: Status of the Kolmogorov-Avrami theory on a cold Ising lattice

Vitaly A. Shneidman

Phys. Rev. E 100, 061301(R) (2019) - Published 6 December, 2019

This work tests the Kolmogorov-Johnson-Mehl-Avrami theory of crystallization kinetics in Ising systems for regimes that are accessible with current computer simulations. The author shows the conditions under which the theory is able to describe the simulation results, and where it fails.

EDITORS' SUGGESTION

Percolation on branching simplicial and cell complexes and its relation to interdependent percolation

Ginestra Bianconi, Ivan Kryven, and Robert M. Ziff

Phys. Rev. E 100, 062311 (2019) - Published 20 December, 2019

The authors explore percolation transitions on certain two-dimensional generalized networks whose boundaries scale like their volume. They find several intermediate transitions that show a discontinuity in the fractal exponent of the giant component, and in the percolation probability.

EDITORS' SUGGESTION

Lorentzian-geometry-based analysis of airplane boarding policies highlights “slow passengers first” as better

Sveinung Erland, Jevgenijs Kaupužs, Vidar Frette, Rami Pugatch, and Eitan Bachmat

Phys. Rev. E 100, 062313 (2019) - Published 27 December, 2019

This paper tackles the problem of airplane boarding by making use of geodesics in an appropriate spacetime. The authors find that boarding slower passengers first reduces the total boarding time, as faster passengers catch up with them and can sit down simultaneously. The results are strictly correct in the limit of infinitely many passengers, but appear to hold for a realistic number of individuals.

EDITORS' SUGGESTION

Temperature control of nematicon trajectories

Gaetano Assanto, Cassandra Khan, Armando Piccardi, and Noel F. Smyth

Phys. Rev. E 100, 062702 (2019) - Published 13 December, 2019

When a light beam propagates through a nematic liquid crystal, it heats the material and the resulting change in temperature in turn affects the propagation of the light. The authors propose a theory that reduces the mathematical complexity using several physical assumptions, and gives remarkable agreement with experimental data.

EDITORS' SUGGESTION

Hard convex lens-shaped particles: Characterization of dense disordered packings

Giorgio Cinacchi and Salvatore Torquato

Phys. Rev. E 100, 062902 (2019) - Published 24 December, 2019

Simulations of hard lens-shaped particles can be used to explore their packing properties. Starting from a loosely packed state, the particles are compressed until isostaticity is reached. The authors find that the maximally packed state is denser and more disordered than its hard-sphere counterpart, and also free of loose rattler particles.

EDITORS' SUGGESTION

Acceptance rate is a thermodynamic function in local Monte Carlo algorithms

Evgeni Burovski, Wolfhard Janke, Maria Guskova, and Lev Shchur

Phys. Rev. E 100, 063303 (2019) - Published 10 December, 2019

Monte Carlo simulations are one of the most widely used computational methods in physics. The authors find that, for a specific model and update scheme, the acceptance rate of Monte Carlo moves depends linearly on the energy. They explore several lattice models and update mechanisms and show how the acceptance rate behaves in the vicinity of the systems’ critical temperatures, and that it can be viewed as a thermodynamic function.

RAPID COMMUNICATIONS

Statistical Physics

RAPID COMMUNICATION

Two-dimensional super-roughening in the three-dimensional Ising model

Hor Dashti-Naserabadi, Abbas Ali Saberi, S. H. E. Rahbari, and Hyunggyu Park

Phys. Rev. E 100, 060101(R) (2019) - Published 13 December, 2019

RAPID COMMUNICATION

Hyperaccurate currents in stochastic thermodynamics

Daniel Maria Busiello and Simone Pigolotti

Phys. Rev. E 100, 060102(R) (2019) - Published 16 December, 2019

RAPID COMMUNICATION

Microscopic reweighting for nonequilibrium steady-state dynamics

Marius Bause, Timon Wittenstein, Kurt Kremer, and Tristan Bereau

Phys. Rev. E 100, 060103(R) (2019) - Published 19 December, 2019

RAPID COMMUNICATION

Vortex-loop calculation of the specific heat of superfluid ${}^{4}{He}$ under pressure

Andrew Forrester and Gary A. Williams

Phys. Rev. E 100, 060104(R) (2019) - Published 23 December, 2019

RAPID COMMUNICATION

Classical stochastic discrete time crystals

F. M. Gambetta, F. Carollo, A. Lazarides, I. Lesanovsky, and J. P. Garrahan

Phys. Rev. E 100, 060105(R) (2019) - Published 24 December, 2019

Nonlinear Dynamics and Chaos

RAPID COMMUNICATION

Nonmonotonic diffusion rates in an atom-optics Lévy kicked rotor

Sanku Paul, Sumit Sarkar, Chetan Vishwakarma, Jay Mangaonkar, M. S. Santhanam, and Umakant Rapol

Phys. Rev. E 100, 060201(R) (2019) - Published 4 December, 2019

RAPID COMMUNICATION

Stochastic resonance via parametric adaptation: Experiments and numerics

Ishant Tiwari, J. M. Cruz, P. Parmananda, and M. Rivera

Phys. Rev. E 100, 060202(R) (2019) - Published 6 December, 2019

Biological Physics

RAPID COMMUNICATION

Chromatin state switching in a polymer model with mark-conformation coupling

Kyosuke Adachi and Kyogo Kawaguchi

Phys. Rev. E 100, 060401(R) (2019) - Published 5 December, 2019

RAPID COMMUNICATION

Fredholm theory for the mean first-passage time of integrate-and-fire oscillators with colored noise input

Carl van Vreeswijk and Farzad Farkhooi

Phys. Rev. E 100, 060402(R) (2019) - Published 17 December, 2019

Colloids, Complex Fluids, and Active Matter

RAPID COMMUNICATION

Translational and rotational dynamics of colloidal particles interacting through reacting linkers

Pritam Kumar Jana and Bortolo Matteo Mognetti

Phys. Rev. E 100, 060601(R) (2019) - Published 2 December, 2019

RAPID COMMUNICATION

Elementary plastic events in amorphous silica

Silvia Bonfanti, Roberto Guerra, Chandana Mondal, Itamar Procaccia, and Stefano Zapperi

Phys. Rev. E 100, 060602(R) (2019) - Published 23 December, 2019

Fluid Dynamics

RAPID COMMUNICATION

Application of the stochastic closure theory to the Townsend-Perry constants

John Kaminsky, Joe Klewicki, and Björn Birnir

Phys. Rev. E 100, 061101(R) (2019) - Published 16 December, 2019

RAPID COMMUNICATION

Acoustic radiation force acting on a heavy particle in a standing wave can be dominated by the acoustic microstreaming

Thierry Baasch, Alen Pavlic, and Jürg Dual

Phys. Rev. E 100, 061102(R) (2019) - Published 23 December, 2019

Plasma Physics

RAPID COMMUNICATION

Nonlinear dynamics of laser-generated ion-plasma gratings: A unified description

H. Peng, C. Riconda, M. Grech, J.-Q. Su, and S. Weber

Phys. Rev. E 100, 061201(R) (2019) - Published 24 December, 2019

Computational Physics

EDITORS' SUGGESTION

RAPID COMMUNICATION

From early nucleation past the percolation threshold: Status of the Kolmogorov-Avrami theory on a cold Ising lattice

Vitaly A. Shneidman

Phys. Rev. E 100, 061301(R) (2019) - Published 6 December, 2019

RAPID COMMUNICATION

Spontaneous shrinkage of droplet on a wetting surface in the phase-field model

Chunhua Zhang and Zhaoli Guo

Phys. Rev. E 100, 061302(R) (2019) - Published 13 December, 2019

ARTICLES

Statistical Physics

Statistical mechanics of the minimum vertex cover problem in stochastic block models

Masato Suzuki and Yoshiyuki Kabashima

Phys. Rev. E 100, 062101 (2019) - Published 2 December, 2019

Non-Markovian harmonic oscillator across a magnetic field and time-dependent force fields

J. C. Hidalgo-Gonzalez and J. I. Jiménez-Aquino

Phys. Rev. E 100, 062102 (2019) - Published 2 December, 2019

Instabilities of time-averaged configurations in thermal glasses

Prasenjit Das, Valery Ilyin, and Itamar Procaccia

Phys. Rev. E 100, 062103 (2019) - Published 2 December, 2019

Energy and spin diffusion in the one-dimensional classical Heisenberg spin chain at finite and infinite temperatures

Nianbei Li

Phys. Rev. E 100, 062104 (2019) - Published 2 December, 2019

Discrete Eulerian model for population genetics and dynamics under flow

Giorgia Guccione, Roberto Benzi, Abigail Plummer, and Federico Toschi

Phys. Rev. E 100, 062105 (2019) - Published 3 December, 2019

Universality of power-law exponents by means of maximum-likelihood estimation

Víctor Navas-Portella, Álvaro González, Isabel Serra, Eduard Vives, and Álvaro Corral

Phys. Rev. E 100, 062106 (2019) - Published 3 December, 2019

Symmetry and its breaking in a path-integral approach to quantum Brownian motion

Joonhyun Yeo

Phys. Rev. E 100, 062107 (2019) - Published 3 December, 2019

Dipole-assisted thermotics: Experimental demonstration of dipole-driven thermal invisibility

Liujun Xu, Shuai Yang, and Jiping Huang

Phys. Rev. E 100, 062108 (2019) - Published 6 December, 2019

Redefinition of site percolation in light of entropy and the second law of thermodynamics

M. S. Rahman and M. K. Hassan

Phys. Rev. E 100, 062109 (2019) - Published 6 December, 2019

Probability distribution of the boundary local time of reflected Brownian motion in Euclidean domains

Denis S. Grebenkov

Phys. Rev. E 100, 062110 (2019) - Published 9 December, 2019

Density dependence of the dynamical processes governing the velocity autocorrelation function of a quantum fluid

Eleonora Guarini, Martin Neumann, Stefano Bellissima, Daniele Colognesi, and Ubaldo Bafile

Phys. Rev. E 100, 062111 (2019) - Published 9 December, 2019

Cooling condition for multilevel quantum absorption refrigerators

Hava Meira Friedman and Dvira Segal

Phys. Rev. E 100, 062112 (2019) - Published 10 December, 2019

Advection improves homogenized models of continuum diffusion in one-dimensional heterogeneous media

Elliot J. Carr

Phys. Rev. E 100, 062113 (2019) - Published 12 December, 2019

Linear impurity modes in an electrical lattice: Theory and experiment

M. I. Molina, L. Q. English, Ming-Hua Chang, and P. G. Kevrekidis

Phys. Rev. E 100, 062114 (2019) - Published 12 December, 2019

Influence of the number of orientational domains on avalanche criticality in ferroelastic transitions

Marcel Porta, Teresa Castán, Avadh Saxena, and Antoni Planes

Phys. Rev. E 100, 062115 (2019) - Published 13 December, 2019

Long-time position distribution of an active Brownian particle in two dimensions

Urna Basu, Satya N. Majumdar, Alberto Rosso, and Grégory Schehr

Phys. Rev. E 100, 062116 (2019) - Published 13 December, 2019

Computation of the dynamic critical exponent of the three-dimensional Heisenberg model

A. Astillero and J. J. Ruiz-Lorenzo

Phys. Rev. E 100, 062117 (2019) - Published 16 December, 2019

Universality of continuous phase transitions on random Voronoi graphs

Manuel Schrauth and Jefferson S. E. Portela

Phys. Rev. E 100, 062118 (2019) - Published 16 December, 2019

Computing characteristic functions of quantum work in phase space

Yixiao Qian and Fei Liu

Phys. Rev. E 100, 062119 (2019) - Published 16 December, 2019

Shock waves from the inhomogeneous Boltzmann equation

Yves Pomeau and Minh-Binh Tran

Phys. Rev. E 100, 062120 (2019) - Published 16 December, 2019

Diffusion-controlled coalescence, fragmentation, and collapse of $d$ -dimensional $A$ -particle islands in the $B$ -particle sea

Boris M. Shipilevsky

Phys. Rev. E 100, 062121 (2019) - Published 16 December, 2019

Transverse temperature interfaces in the Katz-Lebowitz-Spohn driven lattice gas

Ruslan I. Mukhamadiarov, Priyanka, and Uwe C. Täuber

Phys. Rev. E 100, 062122 (2019) - Published 16 December, 2019

Oscillations in feedback-driven systems: Thermodynamics and noise

Daniele De Martino and Andre C. Barato

Phys. Rev. E 100, 062123 (2019) - Published 19 December, 2019

Stochastic resonance for nonequilibrium systems

Valerio Lucarini

Phys. Rev. E 100, 062124 (2019) - Published 19 December, 2019

Statistical method for modeling Knudsen diffusion in nanopores

Fenner Colson and D. A. Barlow

Phys. Rev. E 100, 062125 (2019) - Published 20 December, 2019

Many-body correlations from integral geometry

Joshua F. Robinson, Francesco Turci, Roland Roth, and C. Patrick Royall

Phys. Rev. E 100, 062126 (2019) - Published 20 December, 2019

Analysis and data-driven reconstruction of bivariate jump-diffusion processes

Leonardo Rydin Gorjão, Jan Heysel, Klaus Lehnertz, and M. Reza Rahimi Tabar

Phys. Rev. E 100, 062127 (2019) - Published 20 December, 2019

Optimization induced by stability and the role of limited control near a steady state

J. Gonzalez-Ayala, J. Guo, A. Medina, J. M. M. Roco, and A. Calvo Hernández

Phys. Rev. E 100, 062128 (2019) - Published 23 December, 2019

Unusual geometric percolation of hard nanorods in the uniaxial nematic liquid crystalline phase

Shari P. Finner, Arshia Atashpendar, Tanja Schilling, and Paul van der Schoot

Phys. Rev. E 100, 062129 (2019) - Published 23 December, 2019

Renormalization group crossover in the critical dynamics of field theories with mode coupling terms

Andrea Cavagna, Luca Di Carlo, Irene Giardina, Luca Grandinetti, Tomas S. Grigera, and Giulia Pisegna

Phys. Rev. E 100, 062130 (2019) - Published 23 December, 2019

Vibrational density of states and specific heat in glasses from random matrix theory

M. Baggioli, R. Milkus, and A. Zaccone

Phys. Rev. E 100, 062131 (2019) - Published 23 December, 2019

Thermodynamic uncertainty relation for underdamped Langevin systems driven by a velocity-dependent force

Jae Sung Lee, Jong-Min Park, and Hyunggyu Park

Phys. Rev. E 100, 062132 (2019) - Published 23 December, 2019

Discrete hydrodynamics near solid walls: Non-Markovian effects and the slip boundary condition

D. Duque-Zumajo, J. A. de la Torre, Diego Camargo, and Pep Español

Phys. Rev. E 100, 062133 (2019) - Published 24 December, 2019

Entanglement and matrix elements of observables in interacting integrable systems

Tyler LeBlond, Krishnanand Mallayya, Lev Vidmar, and Marcos Rigol

Phys. Rev. E 100, 062134 (2019) - Published 26 December, 2019

Equivalence between four versions of thermostatistics based on strongly pseudoadditive entropies

Velimir M. Ilić, Antonio Maria Scarfone, and Tatsuaki Wada

Phys. Rev. E 100, 062135 (2019) - Published 26 December, 2019

Approaching the Kosterlitz-Thouless transition for the classical $X Y$ model with tensor networks

Laurens Vanderstraeten, Bram Vanhecke, Andreas M. Läuchli, and Frank Verstraete

Phys. Rev. E 100, 062136 (2019) - Published 26 December, 2019

Thermal state entanglement entropy on a quantum graph

Alberto D. Verga and Ricardo Gabriel Elías

Phys. Rev. E 100, 062137 (2019) - Published 26 December, 2019

Divergence of the Floquet-Magnus expansion in a periodically driven one-body system with energy localization

Taiki Haga

Phys. Rev. E 100, 062138 (2019) - Published 26 December, 2019

Incompatibility probability of random quantum measurements

Lin Zhang, Hua Xiang, Xianqing Li-Jost, and Shao-Ming Fei

Phys. Rev. E 100, 062139 (2019) - Published 26 December, 2019

Achieve higher efficiency at maximum power with finite-time quantum Otto cycle

Jin-Fu Chen, Chang-Pu Sun, and Hui Dong

Phys. Rev. E 100, 062140 (2019) - Published 27 December, 2019

Langevin picture of Lévy walk in a constant force field

Yao Chen, Xudong Wang, and Weihua Deng

Phys. Rev. E 100, 062141 (2019) - Published 30 December, 2019

Estimation of parameters from time traces originating from an Ornstein-Uhlenbeck process

Helmut H. Strey

Phys. Rev. E 100, 062142 (2019) - Published 30 December, 2019

Kardar-Parisi-Zhang equation with temporally correlated noise: A nonperturbative renormalization group approach

Davide Squizzato and Léonie Canet

Phys. Rev. E 100, 062143 (2019) - Published 30 December, 2019

Analytical representation of Gaussian processes in the $A − T$ plane

Mariusz Tarnopolski

Phys. Rev. E 100, 062144 (2019) - Published 30 December, 2019

Nonlinear Dynamics and Chaos

Super-regular breathers in nonlinear systems with self-steepening effect

Chong Liu and Nail Akhmediev

Phys. Rev. E 100, 062201 (2019) - Published 3 December, 2019

Spontaneous and engineered transformations of topological structures in nonlinear media with gain and loss

B. A. Kochetov, O. G. Chelpanova, V. R. Tuz, and A. I. Yakimenko

Phys. Rev. E 100, 062202 (2019) - Published 5 December, 2019

Proper spatial heterogeneities expand the regime of scale-free behavior in a lattice of excitable elements

Urban Marhl and Marko Gosak

Phys. Rev. E 100, 062203 (2019) - Published 12 December, 2019

Synchronization route to weak chimera in four candle-flame oscillators

Krishna Manoj, Samadhan A. Pawar, Suraj Dange, Sirshendu Mondal, R. I. Sujith, Elena Surovyatkina, and Jürgen Kurths

Phys. Rev. E 100, 062204 (2019) - Published 18 December, 2019

Long-range donor-acceptor electron transport mediated by $α$ helices

L. S. Brizhik, J. Luo, B. M. A. G. Piette, and W. J. Zakrzewski

Phys. Rev. E 100, 062205 (2019) - Published 19 December, 2019

Nonlinear dynamics of coupled transverse-rotational waves in granular chains

Qicheng Zhang, Olga Umnova, and Rodolfo Venegas

Phys. Rev. E 100, 062206 (2019) - Published 19 December, 2019

Chaotic advection and mixing by a pair of microrotors in a circular domain

Phanindra Tallapragada and Senbagaraman Sudarsanam

Phys. Rev. E 100, 062207 (2019) - Published 23 December, 2019

Statistical properties of the localization measure of chaotic eigenstates and the spectral statistics in a mixed-type billiard

Benjamin Batistić, Črt Lozej, and Marko Robnik

Phys. Rev. E 100, 062208 (2019) - Published 24 December, 2019

Propagation of modulated waves in narrow-bandpass one-dimensional lattices

Serge Bruno Yamgoué, Bonaventure Nana, Guy Roger Deffo, and François Beceau Pelap

Phys. Rev. E 100, 062209 (2019) - Published 24 December, 2019

Low-dimensional dynamics for higher-order harmonic, globally coupled phase-oscillator ensembles

Chen Chris Gong and Arkady Pikovsky

Phys. Rev. E 100, 062210 (2019) - Published 26 December, 2019

Two scenarios for the onset and suppression of collective oscillations in heterogeneous populations of active rotators

Vladimir Klinshov and Igor Franović

Phys. Rev. E 100, 062211 (2019) - Published 27 December, 2019

Networks and Complex Systems

Rare-event properties of the Nagel-Schreckenberg model

Wiebke Staffeldt and Alexander K. Hartmann

Phys. Rev. E 100, 062301 (2019) - Published 2 December, 2019

Discrimination emerging through spontaneous symmetry breaking in a spatial prisoner's dilemma model with multiple labels

Gorm Gruner Jensen, Frederik Tischel, and Stefan Bornholdt

Phys. Rev. E 100, 062302 (2019) - Published 2 December, 2019

Markov chain approach to model intertemporal choices and coverages in air transport markets

Daniel O. Cajueiro, Felipe N. Mundim, João I. F. Martins, Patricia A. M. Sakowski, and Roberto F. S. Andrade

Phys. Rev. E 100, 062303 (2019) - Published 9 December, 2019

Customer mobility and congestion in supermarkets

Fabian Ying, Alisdair O. G. Wallis, Mariano Beguerisse-Díaz, Mason A. Porter, and Sam D. Howison

Phys. Rev. E 100, 062304 (2019) - Published 9 December, 2019

Concurrency and reachability in treelike temporal networks

Eun Lee, Scott Emmons, Ryan Gibson, James Moody, and Peter J. Mucha

Phys. Rev. E 100, 062305 (2019) - Published 10 December, 2019

Enhancing power grid synchronization and stability through time-delayed feedback control

Halgurd Taher, Simona Olmi, and Eckehard Schöll

Phys. Rev. E 100, 062306 (2019) - Published 11 December, 2019

Markov modeling via ordinal partitions: An alternative paradigm for network-based time-series analysis

Konstantinos Sakellariou, Thomas Stemler, and Michael Small

Phys. Rev. E 100, 062307 (2019) - Published 18 December, 2019

Markovian approach to tackle the interaction of simultaneous diseases

D. Soriano-Paños, F. Ghanbarnejad, S. Meloni, and J. Gómez-Gardeñes

Phys. Rev. E 100, 062308 (2019) - Published 19 December, 2019

Geometrical and spectral study of $β$ -skeleton graphs

L. Alonso, J. A. Méndez-Bermúdez, and Ernesto Estrada

Phys. Rev. E 100, 062309 (2019) - Published 19 December, 2019

First encounters on combs

Junhao Peng and Elena Agliari

Phys. Rev. E 100, 062310 (2019) - Published 20 December, 2019

EDITORS' SUGGESTION

Percolation on branching simplicial and cell complexes and its relation to interdependent percolation

Ginestra Bianconi, Ivan Kryven, and Robert M. Ziff

Phys. Rev. E 100, 062311 (2019) - Published 20 December, 2019

Optimal short-term memory before the edge of chaos in driven random recurrent networks

Taichi Haruna and Kohei Nakajima

Phys. Rev. E 100, 062312 (2019) - Published 23 December, 2019

EDITORS' SUGGESTION

Lorentzian-geometry-based analysis of airplane boarding policies highlights “slow passengers first” as better

Sveinung Erland, Jevgenijs Kaupužs, Vidar Frette, Rami Pugatch, and Eitan Bachmat

Phys. Rev. E 100, 062313 (2019) - Published 27 December, 2019

Biological Physics

Control strategies for the timing of intracellular events

Mengfang Cao, Baohua Qiu, Tianshou Zhou, and Jiajun Zhang

Phys. Rev. E 100, 062401 (2019) - Published 2 December, 2019

Behavioral incentives in a vaccination-dilemma setting with optional treatment

K. M. Ariful Kabir, Marko Jusup, and Jun Tanimoto

Phys. Rev. E 100, 062402 (2019) - Published 4 December, 2019

Active gel segment behaving as an active particle

P. Recho, T. Putelat, and L. Truskinovsky

Phys. Rev. E 100, 062403 (2019) - Published 4 December, 2019

RNA substructure as a random matrix ensemble

Sang Kwan Choi, Chaiho Rim, and Hwajin Um

Phys. Rev. E 100, 062404 (2019) - Published 6 December, 2019

Origin of lipid tilt in flat monolayers and bilayers

Boris Kheyfets, Sergei Mukhin, and Timur Galimzyanov

Phys. Rev. E 100, 062405 (2019) - Published 9 December, 2019

Unified mechanism of local drivers in a percolation model of atrial fibrillation

Max Falkenberg, Andrew J. Ford, Anthony C. Li, Robert Lawrence, Alberto Ciacci, Nicholas S. Peters, and Kim Christensen

Phys. Rev. E 100, 062406 (2019) - Published 9 December, 2019

Cooperativity transitions driven by higher-order oligomer formations in ligand-induced receptor dimerization

Masaki Watabe, Satya N. V. Arjunan, Wei Xiang Chew, Kazunari Kaizu, and Koichi Takahashi

Phys. Rev. E 100, 062407 (2019) - Published 13 December, 2019

Importance of being cross-linked for the bacterial cell wall

Garima Rani and Issan Patri

Phys. Rev. E 100, 062408 (2019) - Published 16 December, 2019

Effect of heterogeneity and spatial correlations on the structure of a tumor invasion front in cellular environments

Youness Azimzade, Abbas Ali Saberi, and Muhammad Sahimi

Phys. Rev. E 100, 062409 (2019) - Published 18 December, 2019

Resonance-driven ion transport and selectivity in prokaryotic ion channels

Ronald L. Westra

Phys. Rev. E 100, 062410 (2019) - Published 23 December, 2019

Dynamic signature of ligand binding over a protein surface

Sutapa Dutta, Mahua Ghosh, Rahul Karmakar, and J. Chakrabarti

Phys. Rev. E 100, 062411 (2019) - Published 20 December, 2019

Response to perturbations as a built-in feature in a mathematical model for paced finger tapping

Claudia R. González, M. Luz Bavassi, and Rodrigo Laje

Phys. Rev. E 100, 062412 (2019) - Published 20 December, 2019

State-dependent mean-field formalism to model different activity states in conductance-based networks of spiking neurons

Cristiano Capone, Matteo di Volo, Alberto Romagnoni, Maurizio Mattia, and Alain Destexhe

Phys. Rev. E 100, 062413 (2019) - Published 23 December, 2019

Pattern formation induced by intraspecific interactions in a predator-prey system

Luciano Stucchi, Javier Galeano, and Desiderio A. Vasquez

Phys. Rev. E 100, 062414 (2019) - Published 23 December, 2019

Effect of visual and auditory sensing cues on collective behavior in Vicsek models

Subhradeep Roy, Masoud Jahromi Shirazi, Benjamin Jantzen, and Nicole Abaid

Phys. Rev. E 100, 062415 (2019) - Published 23 December, 2019

Oscillations and collective excitability in a model of stochastic neurons under excitatory and inhibitory coupling

Italo'Ivo Lima Dias Pinto and Mauro Copelli

Phys. Rev. E 100, 062416 (2019) - Published 24 December, 2019

Mechanical bidomain model of cardiac muscle with unequal anisotropy ratios

Dilmini Wijesinghe and Bradley J. Roth

Phys. Rev. E 100, 062417 (2019) - Published 26 December, 2019

Polymers

Theoretical prediction of morphological selection in amphiphilic systems

Karl Glasner

Phys. Rev. E 100, 062501 (2019) - Published 11 December, 2019

Assembly of heteropolymers via a network of reaction coordinates

Davide Chiuchiù, James Ferrare, and Simone Pigolotti

Phys. Rev. E 100, 062502 (2019) - Published 13 December, 2019

Nanoscale viscosity of confined polyethylene oxide

Zheng Zhang, Junjun Ding, Benjamin M. Ocko, Andrei Fluerasu, Lutz Wiegart, Yugang Zhang, Mark Kobrak, Ye Tian, Honghu Zhang, Julien Lhermitte, Chang-Hwan Choi, Frank T. Fisher, Kevin G. Yager, and Charles T. Black

Phys. Rev. E 100, 062503 (2019) - Published 19 December, 2019

Adsorption of two-dimensional polymers with two- and three-body self-interactions

Nathann T. Rodrigues, Tiago J. Oliveira, Thomas Prellberg, and Aleksander L. Owczarek

Phys. Rev. E 100, 062504 (2019) - Published 27 December, 2019

Colloids, Complex Fluids, and Active Matter

Influence of dielectric layers on estimates of diffusion coefficients and concentrations of ions from impedance spectroscopy

Maxim V. Khazimullin and Yuriy A. Lebedev

Phys. Rev. E 100, 062601 (2019) - Published 2 December, 2019

Breakdown of effective temperature, power law interactions, and self-propulsion in a momentum-conserving active fluid

Amit Singh Vishen, Jacques Prost, and Madan Rao

Phys. Rev. E 100, 062602 (2019) - Published 11 December, 2019

Nonmonotonic behavior in dense assemblies of active colloids

Natsuda Klongvessa, Félix Ginot, Christophe Ybert, Cécile Cottin-Bizonne, and Mathieu Leocmach

Phys. Rev. E 100, 062603 (2019) - Published 12 December, 2019

Highly confined mixtures of parallel hard squares: A density-functional-theory study

Yuri Martínez-Ratón and Enrique Velasco

Phys. Rev. E 100, 062604 (2019) - Published 19 December, 2019

Hydrodynamic attraction of bacteria to gas and liquid interfaces

Adib Ahmadzadegan, Shiyan Wang, Pavlos P. Vlachos, and Arezoo M. Ardekani

Phys. Rev. E 100, 062605 (2019) - Published 20 December, 2019

Accurate determination of the translational correlation function of two-dimensional solids

Yan-Wei Li and Massimo Pica Ciamarra

Phys. Rev. E 100, 062606 (2019) - Published 23 December, 2019

Mesoscopic theory for systems with competing interactions near a confining wall

A. Ciach

Phys. Rev. E 100, 062607 (2019) - Published 27 December, 2019

Molecular dynamics study of a solvation motor in a Lennard-Jones solvent

Ken Tokunaga and Ryo Akiyama

Phys. Rev. E 100, 062608 (2019) - Published 30 December, 2019

Tuning the torque-speed characteristics of the bacterial flagellar motor to enhance swimming speed

Praneet Prakash, Amith Z. Abdulla, Varsha Singh, and Manoj Varma

Phys. Rev. E 100, 062609 (2019) - Published 31 December, 2019

Liquid Crystals

Thermotropic liquid crystal (5CB) on two-dimensional materials

Paul A. Brown, Sean A. Fischer, Jakub Kołacz, Christopher Spillmann, and Daniel Gunlycke

Phys. Rev. E 100, 062701 (2019) - Published 12 December, 2019

EDITORS' SUGGESTION

Temperature control of nematicon trajectories

Gaetano Assanto, Cassandra Khan, Armando Piccardi, and Noel F. Smyth

Phys. Rev. E 100, 062702 (2019) - Published 13 December, 2019

Generalized van der Waals theory for phase behavior of two-dimensional nematic liquid crystals: Phase ordering and the equation of state

María Virginia Zonta and Ezequiel Rodolfo Soulé

Phys. Rev. E 100, 062703 (2019) - Published 26 December, 2019

Multiple minimum-energy paths and scenarios of unwinding transitions in chiral nematic liquid crystals

Semen S. Tenishchev, Alexei D. Kiselev, Aleksei V. Ivanov, and Valery M. Uzdin

Phys. Rev. E 100, 062704 (2019) - Published 31 December, 2019

Films and Interfaces

Elastic properties of symmetric liquid-liquid interfaces

Ramanathan Varadharajan and Frans A. M. Leermakers

Phys. Rev. E 100, 062801 (2019) - Published 18 December, 2019

Symmetry-breaking morphological transitions at chemically nanopatterned walls

Martin Pospíšil, Martin Láska, and Alexandr Malijevský

Phys. Rev. E 100, 062802 (2019) - Published 23 December, 2019

Localization in liquid phase separation: Coarsening and stable structures

Avanish Kumar, Chaitanya Narayanam, Rajesh Khanna, and Sanjay Puri

Phys. Rev. E 100, 062803 (2019) - Published 31 December, 2019

Granular Materials

Saturated random packing built of arbitrary polygons under random sequential adsorption protocol

Michał Cieśla, Piotr Kubala, and Ge Zhang

Phys. Rev. E 100, 062901 (2019) - Published 20 December, 2019

EDITORS' SUGGESTION

Hard convex lens-shaped particles: Characterization of dense disordered packings

Giorgio Cinacchi and Salvatore Torquato

Phys. Rev. E 100, 062902 (2019) - Published 24 December, 2019

Solid Mechanics

Equilibria and bifurcations of a foldable paper-based spring inspired by Kresling-pattern origami

Ravindra Masana and Mohammed F. Daqaq

Phys. Rev. E 100, 063001 (2019) - Published 16 December, 2019

Seismic phononic crystals by elastodynamic Navier equation

Dongwoo Lee, Joo Hwan Oh, In Seok Kang, and Junsuk Rho

Phys. Rev. E 100, 063002 (2019) - Published 20 December, 2019

Self-diffusion in plastic flow of amorphous solids

Kamran Karimi

Phys. Rev. E 100, 063003 (2019) - Published 30 December, 2019

Fluid Dynamics

Generation of a large-scale vorticity in a fast-rotating density-stratified turbulence or turbulent convection

Igor Rogachevskii and Nathan Kleeorin

Phys. Rev. E 100, 063101 (2019) - Published 2 December, 2019

Effects of phase lag on the hovering flight of damselfly and dragonfly

Pei-Yi Zou, Yu-Hsiang Lai, and Jing-Tang Yang

Phys. Rev. E 100, 063102 (2019) - Published 4 December, 2019

Vibroequilibria in microgravity: Comparison of experiments and theory

P. Salgado Sánchez, J. Fernández, I. Tinao, and J. Porter

Phys. Rev. E 100, 063103 (2019) - Published 10 December, 2019

Stability boundaries for the Rayleigh-Taylor instability in accelerated elastic-plastic solid slabs

A. R. Piriz, S. A. Piriz, and N. A. Tahir

Phys. Rev. E 100, 063104 (2019) - Published 12 December, 2019

Jet direction in bubble collapse within rectangular and triangular channels

Lebo Molefe and Ivo R. Peters

Phys. Rev. E 100, 063105 (2019) - Published 13 December, 2019

Active pitching of short splitters past a cylinder: Drag increase and wake

Yaqing Jin, Shyuan Cheng, and Leonardo P. Chamorro

Phys. Rev. E 100, 063106 (2019) - Published 19 December, 2019

Flow-induced buckling dynamics of sperm flagella

Manish Kumar, Derek M. Walkama, Jeffrey S. Guasto, and Arezoo M. Ardekani

Phys. Rev. E 100, 063107 (2019) - Published 20 December, 2019

Clustering of floating tracers in weakly divergent velocity fields

Konstantin V. Koshel, Dmitry V. Stepanov, Eugene A. Ryzhov, Pavel Berloff, and V. I. Klyatskin

Phys. Rev. E 100, 063108 (2019) - Published 20 December, 2019

Upper bound on angular momentum transport in Taylor-Couette flow

Zijing Ding and Elena Marensi

Phys. Rev. E 100, 063109 (2019) - Published 24 December, 2019

Solute transport in porous media studied by lattice Boltzmann simulations at pore scale and x-ray tomography experiments

Chunwei Zhang, Tetsuya Suekane, Kosuke Minokawa, Yingxue Hu, and Anindityo Patmonoaji

Phys. Rev. E 100, 063110 (2019) - Published 26 December, 2019

Numerical study on electrohydrodynamic multiple droplet interactions

P. S. Casas, M. Garzon, L. J. Gray, and J. A. Sethian

Phys. Rev. E 100, 063111 (2019) - Published 30 December, 2019

Flagellated bacteria swim in circles near a rigid wall

Yunyoung Park, Yongsam Kim, and Sookkyung Lim

Phys. Rev. E 100, 063112 (2019) - Published 30 December, 2019

Computational Physics

Extensive analysis of the lattice Boltzmann method on shifted stencils

S. A. Hosseini, C. Coreixas, N. Darabiha, and D. Thévenin

Phys. Rev. E 100, 063301 (2019) - Published 4 December, 2019

Model reduction of rigid-body molecular dynamics via generalized multipole potentials

Paul N. Patrone, Andrew Dienstfrey, and G. B. McFadden

Phys. Rev. E 100, 063302 (2019) - Published 10 December, 2019

EDITORS' SUGGESTION

High-order least-square-based finite-difference–finite-volume method for simulation of incompressible thermal flows on arbitrary grids

Y. Y. Liu, H. W. Zhang, L. M. Yang, and C. Shu

Phys. Rev. E 100, 063308 (2019) - Published 20 December, 2019

Multisector parabolic-equation approach to compute acoustic scattering by noncanonically shaped impenetrable objects

Adith Ramamurti and David C. Calvo

Phys. Rev. E 100, 063309 (2019) - Published 26 December, 2019

Arbitrary Lagrangian-Eulerian-type discrete unified gas kinetic scheme for low-speed continuum and rarefied flow simulations with moving boundaries

Yong Wang (王勇), Chengwen Zhong (钟诚文), and Sha Liu (刘沙)

Phys. Rev. E 100, 063310 (2019) - Published 31 December, 2019

Lattice Boltzmann modeling of fluid-particle interaction based on a two-phase mixture representation

Chrysovalantis Tsigginos, Jianping Meng (孟剑平), Xiao-Jun Gu, and David R. Emerson

Phys. Rev. E 100, 063311 (2019) - Published 31 December, 2019

ERRATA

Erratum: Chimera patterns in two-dimensional networks of coupled neurons [Phys. Rev. E 95, 032224 (2017)]

Alexander Schmidt, Theodoros Kasimatis, Johanne Hizanidis, Astero Provata, and Philipp Hövel

Phys. Rev. E 100, 069901 (2019) - Published 23 December, 2019