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Transient crosslinking controls the condensate formation pathway within chromatin networks

Zong-Pei Wu1, Kerry S. Bloom2, M. Gregory Forest3, and Xue-Zheng Cao1,*

  • 1Department of Physics at Xiamen University, Xiamen 361005, P.R. China
  • 2Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
  • 3Departments of Mathematics, Applied Physical Sciences and Biomedical Engineering, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States

  • *xzcao@xmu.edu.cn

Phys. Rev. E 109, L042401 – Published 5 April, 2024

DOI: https://doi.org/10.1103/PhysRevE.109.L042401

Abstract

The network structure of densely packed chromatin within the nucleus of eukaryotic cells acts in concert with nonequilibrium processes. Using statistical physics simulations, we explore the control provided by transient crosslinking of the chromatin network by structural-maintenance-of-chromosome (SMC) proteins over (i) the physical properties of the chromatin network and (ii) condensate formation of embedded molecular species. We find that the density and lifetime of transient SMC crosslinks regulate structural relaxation modes and tune the sol-vs-gel state of the chromatin network, which imparts control over the kinetic pathway to condensate formation. Specifically, lower density, shorter-lived crosslinks induce sollike networks and a droplet-fusion pathway, whereas higher density, longer-lived crosslinks induce gellike networks and an Ostwald-ripening pathway.

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