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Herding of proteins by the ends of shrinking polymers

Amer Al-Hiyasat1,2, Yazgan Tuna1, Yin-Wei Kuo1, and Jonathon Howard1,*

  • 1Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06511, USA
  • 2Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA

  • *joe.howard@yale.edu

Phys. Rev. E 107, L042601 – Published 11 April, 2023

DOI: https://doi.org/10.1103/PhysRevE.107.L042601

Abstract

The control of biopolymer length is mediated by proteins that localize to polymer ends and regulate polymerization dynamics. Several mechanisms have been proposed to achieve end localization. Here, we propose a novel mechanism by which a protein that binds to a shrinking polymer and slows its shrinkage will be spontaneously enriched at the shrinking end through a “herding” effect. We formalize this process using both lattice-gas and continuum descriptions, and we present experimental evidence that the microtubule regulator spastin employs this mechanism. Our findings extend to more general problems involving diffusion within shrinking domains.

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