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Compaction and swelling of single stretched DNAs driven by molecular crowding

Paritosh Gupta

John F. Marko

Vittore F. Scolari*

  • Department of Molecular Biosciences and Department of Physics and Astronomy, Northwestern University, Evanston, Illinois 60208, USA

  • *Contact author: vittore.scolari@curie.fr

Phys. Rev. E 113, L052401 – Published 6 May, 2026

DOI: https://doi.org/10.1103/9hdm-1lrv

Abstract

We present a theory for the effects of osmotic pressure exerted by macromolecular crowders on a double-stranded DNA or other semiflexible polymer extended by tension. Our results predict the force and crowder-density dependence of the polymer extension. The lowest-order effect is a crowder-dependent compression that counteracts the external stretching force, which can collapse the polymer at a crowder-dependent critical force f*. This compression is dependent on crowder radius r and density ϕ, with higher densities and smaller radii having greater effects on the force-extension curve. At first order in perturbation theory, we also find a fluctuation-dependent correction to the depletion volume, which can overwhelm the simple compression effect for large crowders, leading to expansion of the polymer.

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