Reuse & Permissions

It is not necessary to obtain permission to reuse this article or its components as it is available under the terms of the Creative Commons Attribution 4.0 International license. This license permits unrestricted use, distribution, and reproduction in any medium, provided attribution to the author(s) and the published article's title, journal citation, and DOI are maintained. Please note that some figures may have been included with permission from other third parties. It is your responsibility to obtain the proper permission from the rights holder directly for these figures.

Export citation

Export citation

Choose format for download:

Download Citation
  • Open Access

Rare events of host switching for diseases using a susceptible-infected-recovered model with mutations

Yannick Feld1,2 and Alexander K. Hartmann1,*

  • *Contact author: alexander.hartmann@uni-oldenburg.de

Phys. Rev. E 113, 014302 – Published 6 January, 2026

DOI: https://doi.org/10.1103/8g2r-w6x6

Abstract

We numerically study disease dynamics that lead to the disease switching from one host species to another, resulting in diseases gaining the ability to infect, e.g., humans. Unlike previous studies that focused on branching processes starting with the first infected humans, we begin by considering a disease pathogen that initially cannot infect humans. We model the entire process, starting from an infection in the animal population, including mutations that eventually enable the disease to cause an epidemic outbreak in the human population. We use a susceptible-infected-recovered model on a network consisting of 132 dog and 1320 human nodes, with a single parameter representing the gene of the pathogen. We use numerical large-deviation techniques, specifically the 1/t Wang-Landau algorithm, to calculate the potentially very small probability of the host-switching event. With this approach we are able to resolve probabilities as small as 10−120. Additionally, the 1/t Wang-Landau algorithm allows us to obtain the complete probability density function P(C) of the cumulative fraction C of infected humans, which is an indicator for the severity of the disease in the human population. We also calculate correlations of C with selected quantities q that characterize the outbreak. Due to the application of the rare-event algorithm, this is possible for the entire range of C values.

View figure in article

Physics Subject Headings (PhySH)

Article Text

References (98)

  1. H. W. Hethcote, SIAM Rev. 42, 599 (2000).
  2. M. Salathé and J. H. Jones, PLoS Comput. Biol. 6, e1000736 (2010).
  3. A. Apolloni, C. Poletto, J. J. Ramasco, P. Jensen, and V. Colizza, Theor. Biol. Med. Model. 11, 3 (2014).
  4. R. Pastor-Satorras, C. Castellano, P. Van Mieghem, and A. Vespignani, Rev. Mod. Phys. 87, 925 (2015).
  5. W. Wang, M. Tang, H. E. Stanley, and L. A. Braunstein, Rep. Prog. Phys. 80, 036603 (2017).
  6. C. E. Walters, M. M. Meslé, and I. M. Hall, Epidemics 25, 1 (2018).
  7. L. Tang, Y. Zhou, L. Wang, S. Purkayastha, L. Zhang, J. He, F. Wang, and P. X.-K. Song, Int. Stat. Rev. 88, 462 (2020).
  8. A. Handel, N. L. La Gruta, and P. G. Thomas, Nat. Rev. Immunol. 20, 186 (2020).
  9. Y. Chen, F. Liu, Q. Yu, and T. Li, Appl. Math. Modell. 97, 281 (2021).
  10. A. Mendez-Brito, C. El Bcheraoui, and F. Pozo-Martin, J. Infect. 83, 281 (2021).
  11. Z. Wang, C. T. Bauch, S. Bhattacharyya, A. d'Onofrio, P. Manfredi, M. Perc, N. Perra, M. Salathé, and D. Zhao, Phys. Rep. 664, 1 (2016).
  12. S. Cleaveland, M. K. Laurenson, and L. H. Taylor, Philos. Trans. R. Soc. London B 356, 991 (2001).
  13. L. H. Taylor, S. M. Latham, and M. E. J. Woolhouse, Philos. Trans. R. Soc. London B 356, 983 (2001).
  14. J. Slingenbergh, M. Gilbert, K. de Balogh, and W. Wint, Rev. Sci. Tech. OIE 23, 467 (2004).
  15. C. R. Parrish, E. C. Holmes, D. M. Morens, E.-C. Park, D. S. Burke, C. H. Calisher, C. A. Laughlin, L. J. Saif, and P. Daszak, Microbiol. Mol. Biol. Rev. 72, 457 (2008).
  16. A. D. Luis, D. T. S. Hayman, T. J. O'Shea, P. M. Cryan, A. T. Gilbert, J. R. C. Pulliam, J. N. Mills, M. E. Timonin, C. K. R. Willis, A. A. Cunningham, A. R. Fooks, C. E. Rupprecht, J. L. N. Wood, and C. T. Webb, Proc. R. Soc. B: Biol. Sci. 280, 20122753 (2013).
  17. J.-F. Guégan, A. Ayouba, J. Cappelle, and B. de Thoisy, Environ. Res. Lett. 15, 083007 (2020).
  18. E. C. Holmes, Annu. Rev. Virol. 9, 173 (2022).
  19. J. Charostad, M. Rezaei Zadeh Rukerd, S. Mahmoudvand, D. Bashash, S. M. A. Hashemi, M. Nakhaie, and K. Zandi, Travel Med. Infect. Dis. 55, 102638 (2023).
  20. M. Uhart, R. E. T. Vanstreels, M. I. Nelson, V. Olivera, J. Campagna, V. Zavattieri, P. Lemey, C. Campagna, V. Falabella, and A. Rimondi, Nat. Commun. 15, 9516 (2024).
  21. R. J. Webby and T. M. Uyeki, J. Infect. Dis. 230, 533 (2024).
  22. R. J. Webby and T. M. Uyeki, J. Infect. Dis. 231, e598 (2025).
  23. G. Neumann and Y. Kawaoka, Nat. Rev. Microbiol. 22, 525 (2024).
  24. Z. L. Grange, et al., Proc. Natl. Acad. Sci. USA 118, e2002324118 (2021).
  25. R. Antia, R. R. Regoes, J. C. Koella, and C. T. Bergstrom, Nature (London) 426, 658 (2003).
  26. S. Singh, D. J. Schneider, and C. R. Myers, Phys. Rev. E 89, 032702 (2014).
  27. A. Tripathi, H. C. Dhakal, K. Adhikari, R. C. Timsina, and L. M. Wahl, J. Biol. Dyn. 15, 327 (2021).
  28. S. J. Schreiber, R. Ke, C. Loverdo, M. Park, P. Ahsan, and J. O. Lloyd-Smith, Virus Evol. 7, veaa105 (2021).
  29. W. H. Ng, C. R. Myers, S. McArt, and S. P. Ellner, Am. Nat. 201, 880 (2023).
  30. R. O. Mummah, N. A. Hoff, A. W. Rimoin, and J. O. Lloyd-Smith, One Health Outlook 2, 17 (2020).
  31. J. O. Lloyd-Smith, D. George, K. M. Pepin, V. E. Pitzer, J. R. C. Pulliam, A. P. Dobson, P. J. Hudson, and B. T. Grenfell, Science 326, 1362 (2009).
  32. S. Dorjee, Z. Poljak, C. W. Revie, J. Bridgland, B. McNab, E. Leger, and J. Sanchez, Zoonoses Public Health 60, 383 (2013).
  33. L. K. Ursell, J. L. Metcalf, L. W. Parfrey, and R. Knight, Nutr. Rev. 70, S38 (2012).
  34. A. L. Bryd, Y. Belkaid, and J. A. Segre, Nat. Rev. Microbiol. 16, 143 (2018).
  35. J. Kallmeyer, R. Pockalny, R. R. Adhikari, D. C. Smith, and S. D'Hondt, Proc. Natl. Acad. Sci. USA 109, 16213 (2012).
  36. H. Flemming and S. Wuertz, Nat. Rev. Microbiol. 17, 247 (2019).
  37. R. K. Plowright, C. R. Parrish, H. McCallum, P. J. Hudson, A. I. Ko, A. L. Graham, and J. O. Lloyd-Smith, Nat. Rev. Microbiol. 15, 502 (2017).
  38. B. Longdon, M. A. Brockhurst, C. A. Russell, J. J. Welch, and F. M. Jiggins, PLoS Pathog. 10, e1004395 (2014).
  39. M. Anishchenko, R. A. Bowen, S. Paessler, L. Austgen, I. P. Greene, and S. C. Weaver, Proc. Natl. Acad. Sci. USA 103, 4994 (2006).
  40. M. Linster, S. van Boheemen, M. de Graaf, E. Schrauwen, P. Lexmond, B. Mänz, T. Bestebroer, J. Baumann, D. van Riel, G. Rimmelzwaan, A. Osterhaus, M. Matrosovich, R. Fouchier, and S. Herfst, Cell 157, 329 (2014).
  41. E. Berber, D. Sumbria, and N. Çanakoğlu, J. Infect. Public Health 14, 1051 (2021).
  42. P. Daszak, A. A. Cunningham, and A. D. Hyatt, Science 287, 443 (2000).
  43. P. Daszak, G. M. Tabor, A. M. Kilpatrick, J. Epstein, and R. Plowright, Ann. N.Y. Acad. Sci. 1026, 1 (2004).
  44. S. Rüdiger, A. Plietzsch, F. Sagués, I. M. Sokolov, and J. Kurths, Sci. Rep. 10, 5919 (2020).
  45. W. O. Kermack and A. G. McKendrick, Proc. R. Soc. London A 155, 700 (1927).
  46. I. Z. Kiss, J. C. Miller, and P. L. Simon, Mathematics of Epidemics on Networks (Springer, Cham, 2017).
  47. F. Brauer, C. Castillo-Chavez, and Z. Feng, Mathematical Models in Epidemiology (Springer, New York, 2019).
  48. A. Dembo and O. Zeitouni, Large Deviations Techniques and Applications (Springer, Berlin, 2010).
  49. C. Giardina, J. Kurchan, V. Lecomte, and J. Tailleur, J. Stat. Phys. 145, 787 (2011).
  50. F. den Hollander, Large Deviations (American Mathematical Society, Providence, RI, 2000).
  51. H. Touchette, Phys. Rep. 478, 1 (2009).
  52. H. Touchette, in Modern Computational Science 11: Lecture Notes from the 3rd International Oldenburg Summer School, edited by R. Leidl and A. K. Hartmann (BIS-Verlag, Oldenburg, 2011), arXiv:1106.4146.
  53. Y. Feld and A. K. Hartmann, Phys. Rev. E 105, 034313 (2022).
  54. E. I. Sevensson and R. Calsbeek, The Adaptive Landscape in Evolutionary Biology (Oxford University Press, Oxford, 2012).
  55. J. A. G. M. de Visser and J. Krug, Nat. Rev. Gen. 15, 480 (2014).
  56. S. Manrubia, J. A. Cuesta, J. Aguirre, S. E. Ahnert, L. Altenberg, A. V. Cano, P. Catalán, R. Diaz-Uriarte, S. F. Elena, J. A. García-Martín, P. Hogeweg, B. S. Khatri, J. Krug, A. A. Louis, N. S. Martin, J. L. Payne, M. J. Tarnowski, and M. Weiß, Phys. Life Rev. 38, 55 (2021).
  57. C. Bank, Annu. Rev. Ecol. Evol. Syst. 53, 457 (2022).
  58. A. K. Hartmann and M. Weigt, Phase Transitions in Combinatorial Optimization Problems: Basics, Algorithms and Statistical Mechanics (Wiley-VCH, Weinheim, 2005).
  59. M. Newman, in Networks: An Introduction (Oxford University Press, Oxford, 2010), pp. 552–565.
  60. Y. Feld, Code for simulations in rust, https://github.com/Pardoxa/sir_animal (2023); Gnuplot plot and source data files https://www.doi.org/10.57782/LUTXFX.
  61. https://cland.lsce.ipsl.fr.
  62. G. E. Crooks and D. Chandler, Phys. Rev. E 64, 026109 (2001).
  63. C. Dellago, P. G. Bolhuis, F. S. Csajka, and D. Chandler, J. Chem. Phys. 108, 1964 (1998).
  64. T. Dewenter and A. K. Hartmann, New J. Phys. 17, 015005 (2015).
  65. Y. Feld and A. K. Hartmann, Chaos 29, 113103 (2019).
  66. H. C. Fogedby and W. Ren, Phys. Rev. E 80, 041116 (2009).
  67. A. K. Hartmann, B. Meerson, and P. Sasorov, Phys. Rev. Res. 1, 032043(R) (2019).
  68. A. K. Hartmann, B. Meerson, and P. Sasorov, Phys. Rev. E 104, 054125 (2021).
  69. M. Körner, H. G. Katzgraber, and A. K. Hartmann, J. Stat. Mech. (2006) P04005.
  70. N. G. Fytas and P. E. Theodorakis, Eur. Phys. J. B 86, 30 (2013).
  71. J. K. Pommerenck and D. Roundy, Phys. Rev. E 102, 033306 (2020).
  72. D.-Z. Li, Y.-J. Zhao, and X.-B. Yang, J. Stat. Mech. (2022) 103203.
  73. A. Engel, R. Monasson, and A. K. Hartmann, J. Stat. Phys. 117, 387 (2004).
  74. A. K. Hartmann, Eur. Phys. J. B 84, 627 (2011).
  75. A. K. Hartmann, Eur. Phys. J. Spec. Top. 226, 567 (2017).
  76. H. Schawe and A. K. Hartmann, Eur. Phys. J. B 92, 73 (2019).
  77. P. Werner and A. K. Hartmann, Phys. Rev. E 104, 034407 (2021).
  78. P. Ojeda, M. E. Garcia, A. Londoño, and N.-Y. Chen, Biophys. J. 96, 1076 (2009).
  79. A. D. Swetnam and M. P. Allen, J. Comput. Chem. 32, 816 (2011).
  80. P. Singh, S. K. Sarkar, and P. Bandyopadhyay, J. Chem. Phys. 141, 015103 (2014).
  81. R. E. Belardinelli and V. D. Pereyra, Phys. Rev. E 75, 046701 (2007).
  82. F. Wang and D. P. Landau, Phys. Rev. Lett. 86, 2050 (2001).
  83. Q. Yan and J. J. de Pablo, Phys. Rev. Lett. 90, 035701 (2003).
  84. R. E. Belardinelli, S. Manzi, and V. D. Pereyra, Phys. Rev. E 78, 067701 (2008).
  85. R. E. Belardinelli and V. D. Pereyra, Phys. Rev. E 93, 053306 (2016).
  86. W. K. Hastings, Biometrika 57, 97 (1970).
  87. M. E. J. Newman and G. T. Barkema, Monte Carlo Methods in Statistical Physics (Clarendon Press, Oxford, 1999).
  88. D. P. Landau and K. Binder, A Guide to Monte Carlo Simulations in Statistical Physics, 4th ed. (Cambridge University Press, Cambridge, UK, 2014).
  89. J. Lee, Phys. Rev. Lett. 71, 211 (1993).
  90. G. E. P. Box and M. E. Muller, Ann. Math. Stat. 29, 610 (1958).
  91. A. K. Hartmann, Big Practical Guide to Computer Simulations (World Scientific, Singapore, 2015).
  92. H. Schawe, A. K. Hartmann, S. N. Majumdar, and G. Schehr, Europhys. Lett. 124, 40005 (2018).
  93. M. Laager, C. Mbilo, E. A. Madaye, A. Naminou, M. Léchenne, A. Tschopp, S. K. Naïssengar, T. Smieszek, J. Zinsstag, and N. Chitnis, PLOS Neglected Trop. Dis. 12, e0006680 (2018).
  94. M. Barthelemy, Spatial Networks (Springer, Cham, 2022).
  95. M. D. McKay, R. J. Beckman, and W. J. Conover, Technometrics 21, 239 (1979).
  96. B. Tang, J. Am. Stat. Assoc. 88, 1392 (1993).
  97. D. J. Watts and S. H. Strogatz, Nature (London) 393, 440 (1998).
  98. M. Léchenne, A. Oussiguere, K. Naissengar, R. Mindekem, L. Mosimann, G. Rives, J. Hattendorf, D. D. Moto, I. O. Alfaroukh, and J. Zinsstag, Vaccine 34, 571 (2016).

Outline

Information

Sign In to Your Journals Account

Filter

Filter

Article Lookup

Enter a citation