At an intermediate activation level, striated muscle exhibits autonomous oscillations called SPOC, in which the basic contractile units, sarcomeres, oscillate in length, and various oscillatory patterns such as traveling waves and their disrupted forms appear in a myofibril. Here we show that these patterns are reproduced by mechanically connecting in series the unit model that explains characteristics of SPOC at the single-sarcomere level. We further reduce the connected model to phase equations, revealing that the combination of local and global couplings is crucial to the emergence of these patterns.

The possibility for proteins to aggregate in different superstructures, i.e. large-scale polymorphism, has been widely observed, but an understanding of the physicochemical mechanisms behind it is still out of reach. Here we present a theoretical model for the description of a generic aggregate formed from an ensemble of charged proteins. The model predicts the formation of multifractal structures with the geometry of the growth determined by the electrostatic interactions between single proteins. The model predictions are successfully verified in comparison with experimental curves for aggregate growth allowing us to reveal the mechanism of formation of such complex structures. The model is general and is able to predict aggregate morphologies occurring both in vivo and in vitro. Our findings provide a framework where the physical interactions between single proteins, the aggregate morphology, and the growth kinetics are connected into a single model in agreement with the experimental data.

We consider particles moving in rotating saddle-shaped potentials in two dimensions. It is known that such rotating potentials can generate bounded motion for particles with a parabolic dispersion law through the combination of potential, centrifugal, and Coriolis forces in the rotating frame. When applied to massless Dirac particles, for example, electrons in graphene, such a potential is shown to lead to eigenstates that are spatially localized near the center of the saddle at certain energies. Although other states also exist at these energies, they have nonoverlapping support in the oscillator basis, which also tends to give the localized states a substantial lifetime when imperfections are present.

We develop a nonequilibrium model of condensation and lasing of photons in a dye filled microcavity. We examine in detail the nature of the thermalization process induced by absorption and emission of photons by the dye molecules, and investigate when the photons are able to reach a thermal equilibrium Bose-Einstein distribution. At low temperatures, or large cavity losses, the absorption and emission rates are too small to allow the photons to reach thermal equilibrium and the behavior becomes more like that of a conventional laser.

We compute the entanglement entropy of a wide class of models that may be characterized as describing matter coupled to gauge fields. Our principle result is an entanglement sum rule that states that the entropy of the full system is the sum of the entropies of the two components. In the context of the models we consider, this result applies to the full entropy, but more generally it is a statement about the additivity of universal terms in the entropy. Our proof simultaneously extends and simplifies previous arguments, with extensions including new models at zero temperature as well as the ability to treat finite temperature crossovers. We emphasize that while the additivity is an exact statement, each term in the sum may still be difficult to compute. Our results apply to a wide variety of phases including Fermi liquids, spin liquids, and some non-Fermi liquid metals. For example, we prove that our model of an interacting Fermi liquid has exactly the log violation of the area law for entanglement entropy predicted by the Widom formula in agreement with earlier arguments.

Among all entanglement measures negativity arguably is the best known and most popular tool to quantify bipartite quantum correlations. It is easily computed for arbitrary states of a composite system and can therefore be applied to discuss entanglement in an ample variety of situations. However, as opposed to logarithmic negativity, its direct physical meaning has not been pointed out yet. We show that the negativity can be viewed as an estimator of how many degrees of freedom of two subsystems are entangled. As it is possible to give lower bounds for the negativity even in a device-independent setting, it is the appropriate quantity to certify quantumness of both parties in a bipartite system and to determine the minimum number of dimensions that contribute to the quantum correlations.

Statistical lattice ensembles of loops in three or more dimensions typically have phases in which the longest loops fill a finite fraction of the system. In such phases it is natural to ask about the distribution of loop lengths. We show how to calculate moments of these distributions using $C{P}^{n-1}$ or $R{P}^{n-1}$ and $\mathrm{O}(n)$ $\sigma$ models together with replica techniques. The resulting joint length distribution for macroscopic loops is Poisson-Dirichlet with a parameter $\theta$ fixed by the loop fugacity and by symmetries of the ensemble. We also discuss features of the length distribution for shorter loops, and use numerical simulations to test and illustrate our conclusions.

All beams are a superposition of plane waves, which carry linear momentum in the direction of propagation with no net azimuthal component. However, plane waves incident on a hologram can produce a vortex beam carrying orbital angular momentum that seems to require an azimuthal linear momentum, which presents a paradox. We resolve this by showing that the azimuthal momentum is not a true linear momentum but the azimuthal momentum density is a true component of the linear momentum density.

The problem of estimating an unknown force driving a linear oscillator is revisited. When using linear measurement, feedback is often cited as a mechanism to enhance bandwidth, sensitivity or resolution. We show that as long as the oscillator dynamics are known, there exists a real-time estimation strategy that reproduces the same measurement record as any arbitrary feedback protocol. Consequently some form of nonlinearity is required to gain any advantage beyond estimation alone. This result holds true in both quantum and classical systems, with nonstationary forces and feedback, and in the general case of non-Gaussian and correlated noise. Recently, feedback enhanced incoherent force resolution has been demonstrated [E. Gavartin, P. Verlot, and T. J. Kippenberg, Nat. Nano. 7, 509 (2012)], with the enhancement attributed to a feedback induced modification of the mechanical susceptibility. As a proof-of-principle, we experimentally reproduce this result through straightforward filtering.

We propose an experimentally accessible single-photon routing scheme using a $△$-type three-level atom embedded in quantum multichannels composed of coupled-resonator waveguides. Via the on-demand classical field being applied to the atom, the router can extract a single photon from the incident channel, and then redirect it into another. The efficient function of the perfect reflection of the single-photon signal in the incident channel is rooted in the coherent resonance and the existence of photonic bound states.

We report an experimental and numerical study of the effect of spatial confinement in turbulent thermal convection. It is found that when the width of the convection cell is narrowed, the heat-transfer efficiency increases significantly despite the fact that the overall flow is slowed down by the increased drag force from the sidewalls. Detailed experimental and numerical studies show that this enhancement is brought about by the changes in the dynamics and morphology of the thermal plumes in the boundary layers and in the large-scale flow structures in the bulk. It is found that the confined geometry produces more coherent and energetic hot and cold plume clusters that go up and down in random locations, resulting in more uniform and thinner thermal boundary layers. The study demonstrates how changes in turbulent bulk flow can influence the boundary layer dynamics and shows that the prevalent mode of heat transfer existing in larger aspect ratio convection cells, in which hot and cold thermal plumes are carried by the large-scale circulation along opposite sides of the sidewall, is not the most efficient way for heat transport.

Stimulated Raman scattering of an ultraintense laser pulse in plasmas is studied by perturbatively including the leading order term of the Landau-Lifshitz radiation reaction force in the equation of motion for plasma electrons. In this approximation, the radiation reaction force causes a phase shift in nonlinear current densities that drive the two Raman sidebands (anti-Stokes and Stokes waves), manifesting itself into the nonlinear mixing of two sidebands. This mixing results in a strong enhancement in the growth of the forward Raman scattering instability.

We study topological excitations in spin-one Bose-Einstein condensates trapped in an elongated double-well optical potential. This system hosts a new topological defect, the spin Josephson vortex (SJV), which forms due to the competition between the interwell atomic tunneling and short-range ferromagnetic two-body interaction. We identify the spin structure and formation dynamics of the SJV and determine the phase diagram of the system. By exploiting the intrinsic stability of the SJV, we propose a dynamical method to create SJVs under realistic experimental conditions.

Using surface x-ray diffraction in combination with ab initio calculations, we demonstrate that the atomic structure of ultrathin ${\mathrm{BaTiO}}_3$ (BTO) films grown on Me(001) surfaces ($\mathrm{Me}=\mathrm{Fe}$, Pd, Pt) depends on subtle modifications of the interface chemical composition. A complete reversal of the surface termination from a BaO- [BTO on Fe(001)] to a ${\mathrm{TiO}}_2$-terminated film [BTO on Pt(001)] is observed which goes in parallel with the adsorption of submonolayer amounts of oxygen at metal hollow sites of the interface. Our results may suggest a new route to an overall control of both the surface and the interface geometry in ${\mathrm{BaTiO}}_3/\mathrm{\text{metal}}$ contacts.

We study ion-damaged crystalline silicon by combining nanocalorimetric experiments with an off-lattice kinetic Monte Carlo simulation to identify the atomistic mechanisms responsible for the structural relaxation over long time scales. We relate the logarithmic relaxation, observed in a number of disordered systems, with heat-release measurements. The microscopic mechanism associated with this logarithmic relaxation can be described as a two-step replenish and relax process. As the system relaxes, it reaches deeper energy states with logarithmically growing barriers that need to be unlocked to replenish the heat-releasing events leading to lower-energy configurations.

We report the results of a quartz crystal microbalance experiment at 100 MHz for a ${}^3\mathrm{He}\mathrm{\text{−}}{}^4\mathrm{He}$ mixture film on a planar gold substrate. The results reveal temperature-dependent pinning or depinning of ${}^3\mathrm{He}$ overlayers above a critical oscillation velocity and indicate that the appearance of a macroscopic condensed state in the underlying ${}^4\mathrm{He}$ layer possibly affects the interfacial friction.

The fluctuations of the charge on an electrode contain information on the microscopic correlations within the adjacent fluid and their effect on the electronic properties of the interface. We investigate these fluctuations using molecular dynamics simulations in a constant-potential ensemble with histogram reweighting techniques. This approach offers, in particular, an efficient, accurate, and physically insightful route to the differential capacitance that is broadly applicable. We demonstrate these methods with three different capacitors: pure water between platinum electrodes and a pure as well as a solvent-based organic electrolyte each between graphite electrodes. The total charge distributions with the pure solvent and solvent-based electrolytes are remarkably Gaussian, while in the pure ionic liquid the total charge distribution displays distinct non-Gaussian features, suggesting significant potential-driven changes in the organization of the interfacial fluid.

Computationally efficient semilocal approximations of density functional theory at the level of the local spin density approximation (LSDA) or generalized gradient approximation (GGA) poorly describe weak interactions. We show improved descriptions for weak bonds (without loss of accuracy for strong ones) from a newly developed semilocal meta-GGA (MGGA), by applying it to molecules, surfaces, and solids. We argue that this improvement comes from using the right MGGA dimensionless ingredient to recognize all types of orbital overlap.

We formulate the Kohn-Sham density functional theory (KS-DFT) as a statistical theory in which the electron density is determined from an average of correlated stochastic densities in a trace formula. The key idea is that it is sufficient to converge the total energy per electron to within a predefined statistical error in order to obtain reliable estimates of the electronic band structure, the forces on nuclei, the density and its moments, etc. The fluctuations in the total energy per electron are guaranteed to decay to zero as the system size increases. This facilitates “self-averaging” which leads to the first ever report of sublinear scaling KS-DFT electronic structure. The approach sidesteps calculation of the density matrix and thus, is insensitive to its evasive sparseness, as demonstrated here for silicon nanocrystals. The formalism is not only appealing in terms of its promise to far push the limits of application of KS-DFT, but also represents a cognitive change in the way we think of electronic structure calculations as this stochastic theory seamlessly converges to the thermodynamic limit.

We explore potentials that break time-reversal symmetry to confine the surface states of 3D topological insulators into quantum wires and quantum dots. A magnetic domain wall on a ferromagnet insulator cap layer provides interfacial states predicted to show the quantum anomalous Hall effect (QAHE). Here, we show that confinement can also occur at magnetic domain heterostructures, with states extended in the inner domain, as well as interfacial QAHE states at the surrounding domain walls. The proposed geometry allows the isolation of the wire and dot from spurious circumventing surface states. For the quantum dots, we find that highly spin-polarized quantized QAHE states at the dot edge constitute a promising candidate for quantum computing qubits.