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Joint Distribution of Nuclear and Cytoplasmic mRNA Levels in Stochastic Models of Gene Expression: Analytical Results and Parameter Inference

Yiling Wang1, Juraj Szavits-Nossan2, Zhixing Cao1,3,*, and Ramon Grima2,†

  • *Contact author: z.cao@queensu.ca
  • †Contact author: ramon.grima@ed.ac.uk

Stochastic thresholds in hemostasis and thrombosis: A multiscale biophysical framework from transcriptional bursting to thrombin propagation

Bowen Li and Ahsanullah Unar

Progress in Biophysics and Molecular Biology 201 16 (2026)

From noise to models to numbers: Evaluating negative binomial models and parameter estimations in single-cell RNA-seq

Yiling Wang, Zhanpeng Shu, Zhixing Cao, Ramon Grima, and Ilya Ioshikhes

PLoS Comput Biol 22 e1014014 (2026)

Efficiency, accuracy and robustness of probability generating function based parameter inference method for stochastic biochemical reactions

Shiyue Li, Yiling Wang, Zhanpeng Shu, Ramon Grima, Qingchao Jiang, Zhixing Cao, and Alejandro Fernández Villaverde

PLoS Comput Biol 22 e1014160 (2026)

Generalized master equation for stochastic gene expression with non-Markovian degradation

Changhong Shi, Xiyan Yang, Tianshou Zhou, and Jiajun Zhang

Phys. Rev. Research 8 013008 (2026)

Modeling of Stochastic Delay Birth-Death Processes

Xiaoqing Wen and Hongwei Yin

Chinese Journal of Physics (2026)

Promoter Architecture as a Design Principle for Buffering Transcriptional Noise and Diversifying Expression Patterns

Xiyan Yang, Zihao Wang, Changhong Shi, Yahao Wu, and Jiajun Zhang

Bull Math Biol 88 14 (2026)

Stochastic modeling of the mRNA kinetic process: A delay chemical master-equation model based on a survival probability

Hongwei Yin, Xiaoqing Wen, and Haohua Wang

Phys. Rev. E 112 044405 (2025)

Mechanistic inference of stochastic gene expression from structured single-cell data

Christopher E. Miles

Current Opinion in Systems Biology 42 100555 (2025)

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