- Open Access
Adsorption sites and electronic structure of benzene, naphthalene, and anthracene on a monolayer
Phys. Rev. B 114, 115301 – Published 3 August, 2026
DOI: https://doi.org/10.1103/xtdg-wzwk
Abstract
We investigate the adsorption geometry, binding energetics, and electronic structure of the polycyclic aromatic hydrocarbons benzene, naphthalene, and anthracene on a monolayer of using first-principles calculations. Structural relaxations are performed within density functional theory (DFT) including corrections for van der Waals interactions. Quasiparticle electronic structures are subsequently obtained using many-body perturbation theory employing the approximation. All three molecules preferentially adsorb flat above sulfur sites of the surface and form type-I heterojunctions with . Only anthracene exhibits weak hybridization with the valence band maximum (VBM) and VBM-1, leading to a slight reduction of the valence band splitting. The HOMO-LUMO (highest occupied molecular orbital, lowest unoccupied molecular orbital) gaps of the molecules are substantially reduced by the dielectric screening of the substrate. These results highlight the asymmetric role of screening and hybridization in -organic hybrid systems and provide insight into band alignment and electronic structure engineering for molecularly functionalized two-dimensional semiconductors.
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References (73)
- B. You, X. Wang, G. Chen, and Z. Zheng, Prediction of electronic structure of van der Waals interfaces: Benzene adsorbed monolayer and , Physica E 88, 87 (2017).
- I. Fedorov, Topological analysis of electron density in graphene/benzene and graphene/hBN, Materials 18, 1790 (2025).
- A. Bilić, J. R. Reimers, N. S. Hush, R. C. Hoft, and M. J. Ford, Adsorption of benzene on copper, silver, and gold surfaces, J. Chem. Theory Comput. 2, 1093 (2006).
- M. Chesters and G. Somorjai, The chemisorption of oxygen, water and selected hydrocarbons on the (111) and stepped gold surfaces, Surf. Sci. 52, 21 (1975).
- M. Drüppel, T. Deilmann, J. Noky, P. Marauhn, P. Krüger, and M. Rohlfing, Electronic excitations in transition metal dichalcogenide monolayers from an approach, Phys. Rev. B 98, 155433 (2018).
- A. Kuc, N. Zibouche, and T. Heine, Influence of quantum confinement on the electronic structure of the transition metal sulfide , Phys. Rev. B 83, 245213 (2011).
- Q. H. Wang, K. Kalantar-Zadeh, A. Kis, J. N. Coleman, and M. S. Strano, Electronics and optoelectronics of two-dimensional transition metal dichalcogenides, Nat. Nanotechnol. 7, 699 (2012).
- H. Li, Z. Yin, Q. He, H. Li, X. Huang, G. Lu, D. W. H. Fam, A. I. Y. Tok, Q. Zhang, and H. Zhang, Fabrication of single- and multilayer film-based field-effect transistors for sensing NO at room temperature, Small 8, 63 (2012).
- Q. He, Z. Zeng, Z. Yin, H. Li, S. Wu, X. Huang, and H. Zhang, Fabrication of flexible thin-film transistor arrays for practical gas-sensing applications, Small 8, 2994 (2012).
- J. Feng, L. Peng, C. Wu, X. Sun, S. Hu, C. Lin, J. Dai, J. Yang, and Y. Xie, Giant moisture responsiveness of ultrathin nanosheets for novel touchless positioning interface, Adv. Mater. 24, 1969 (2012).
- E. Gourmelon, O. Lignier, H. Hadouda, G. Couturier, J. Bernède, J. Tedd, J. Pouzet, and J. Salardenne, ( = W, Mo) photosensitive thin films for solar cells, Sol. Energy Mater. Sol. Cells 46, 115 (1997).
- C. K. Sumesh and S. C. Peter, Two-dimensional semiconductor transition metal based chalcogenide based heterostructures for water splitting applications, Dalton Trans. 48, 12772 (2019).
- H. Li, X. Jia, Q. Zhang, and X. Wang, Metallic transition-metal dichalcogenide nanocatalysts for energy conversion, Chem 4, 1510 (2018).
- V. Podzorov, M. E. Gershenson, C. Kloc, R. Zeis, and E. Bucher, High-mobility field-effect transistors based on transition metal dichalcogenides, Appl. Phys. Lett. 84, 3301 (2004).
- B. Radisavljevic, A. Radenovic, J. Brivio, V. Giacometti, and A. Kis, Single-layer transistors, Nat. Nanotechnol. 6, 147 (2011).
- J. Pu, Y. Yomogida, K.-K. Liu, L.-J. Li, Y. Iwasa, and T. Takenobu, Highly flexible thin-film transistors with ion gel dielectrics, Nano Lett. 12, 4013 (2012).
- A. Umerbekova and M. Pavanello, Many‐body response of benzene at monolayer : Van der waals interactions and spectral broadening, Int. J. Quantum Chem. 120, e26243 (2020).
- Y. K. Qu, X. G. Zhao, L. X. Wang, and H. F. Li, Study on adsorption of diesel molecules on and NiMoS catalysts, Mater. Sci. Forum 1112, 159 (2024).
- J. P. Perdew, K. Burke, and M. Ernzerhof, Generalized gradient approximation made simple, Phys. Rev. Lett. 77, 3865 (1996).
- S. Grimme, J. Antony, S. Ehrlich, and H. Krieg, A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu, J. Chem. Phys. 132, 154104 (2010).
- M. Rohlfing, Electronic excitations from a perturbative approach, Phys. Rev. B 82, 205127 (2010).
- H. Osthues, C. Schwermann, J. A. Preuß, T. Deilmann, R. Bratschitsch, M. Rohlfing, and N. L. Doltsinis, Covalent photofunctionalization and electronic repair of 2H- via nitrogen incorporation, Phys. Chem. Chem. Phys. 23, 18517 (2021).
- P. Steeger, J.-H. Graalmann, R. Schmidt, I. Kupenko, C. Sanchez-Valle, P. Marauhn, T. Deilmann, S. M. de Vasconcellos, M. Rohlfing, and R. Bratschitsch, Pressure dependence of intra- and interlayer excitons in 2H- bilayers, Nano Lett. 23, 8947 (2023).
- L. Kleinman and D. M. Bylander, Efficacious form for model pseudopotentials, Phys. Rev. Lett. 48, 1425 (1982).
- D. R. Hamann, Generalized norm-conserving pseudopotentials, Phys. Rev. B 40, 2980 (1989).
- G. B. Bachelet, D. R. Hamann, and M. Schlüter, Pseudopotentials that work: From H to Pu, Phys. Rev. B 26, 4199 (1982).
- J. Wieferink, P. Krüger, and J. Pollmann, Improved hybrid algorithm with Gaussian basis sets and plane waves: First-principles calculations of ethylene adsorption on , Phys. Rev. B 74, 205311 (2006).
- See Supplemental Material at http://link.aps.org/supplemental/10.1103/xtdg-wzwk for details on parameter convergence and further adsorption sites.
- H. J. Monkhorst and J. D. Pack, Special points for Brillouin-zone integrations, Phys. Rev. B 13, 5188 (1976).
- S. F. Boys and F. Bernardi, The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors, Mol. Phys. 19, 553 (1970).
- L. Hedin, New method for calculating the one-particle Green's function with application to the electron-gas problem, Phys. Rev. 139, A796 (1965).
- W. Kohn and L. J. Sham, Self-consistent equations including exchange and correlation effects, Phys. Rev. 140, A1133 (1965).
- F. Gygi and A. Baldereschi, Quasiparticle energies in semiconductors: Self-energy correction to the local-density approximation, Phys. Rev. Lett. 62, 2160 (1989).
- C. S. Wang and W. E. Pickett, Density-functional theory of excitation spectra of semiconductors: Application to Si, Phys. Rev. Lett. 51, 597 (1983).
- V. Fiorentini and A. Baldereschi, Dielectric scaling of the self-energy scissor operator in semiconductors and insulators, Phys. Rev. B 51, 17196 (1995).
- F. Bechstedt, R. Enderleln, and R. Wischnewski, Binding energies and chemical shifts of least bound core electron excitations in cubic semiconductors, Physica Status Solidi B 107, 637 (1981).
- R. Frisenda, Y. Niu, P. Gant, M. Muñoz, and A. Castellanos-Gomez, Naturally occurring van der Waals materials, npj 2D Mater. Appl. 4, 38 (2020).
- S. Manzeli, D. Ovchinnikov, D. Pasquier, O. V. Yazyev, and A. Kis, 2D transition metal dichalcogenides, Nat. Rev. Mater. 2, 17033 (2017).
- G. Gao, Y. Jiao, F. Ma, Y. Jiao, E. Waclawik, and A. Du, Charge mediated semiconducting-to-metallic phase transition in molybdenum disulfide monolayer and hydrogen evolution reaction in new 1T′ phase, J. Phys. Chem. C 119, 13124 (2015).
- Y. Ding, Y. Wang, J. Ni, L. Shi, S. Shi, and W. Tang, First principles study of structural, vibrational and electronic properties of graphene-like ( = Mo, Nb, W, Ta; = S, Se, Te) monolayers, Physica B 406, 2254 (2011).
- A. Kumar and P. K. Ahluwalia, A first principle comparative study of electronic and optical properties of and , Mater. Chem. Phys. 135, 755 (2012).
- A. Ramasubramaniam, Large excitonic effects in monolayers of molybdenum and tungsten dichalcogenides, Phys. Rev. B 86, 115409 (2012).
- W. Zhao, J. Pan, Y. Fang, X. Che, D. Wang, K. Bu, and F. Huang, Metastable : Crystal structure, electronic band structure, synthetic approach and intriguing physical properties, Chem. Eur. J. 24, 15942 (2018).
- H.-P. Komsa and A. V. Krasheninnikov, Native defects in bulk and monolayer from first principles, Phys. Rev. B 91, 125304 (2015).
- F. Zhang, Z. Lu, Y. Choi, H. Liu, H. Zheng, L. Xie, K. Park, L. Jiao, and C. Tao, Atomically resolved observation of continuous interfaces between an as-grown monolayer and a heterobilayer on , ACS Appl. Nano Mater. 1, 2041 (2018).
- T. Böker, R. Severin, A. Müller, C. Janowitz, R. Manzke, D. Voß, P. Krüger, A. Mazur, and J. Pollmann, Band structure of , and : Angle-resolved photoelectron spectroscopy and ab initio calculations, Phys. Rev. B 64, 235305 (2001).
- W. S. Yun, S. W. Han, S. C. Hong, I. G. Kim, and J. D. Lee, Thickness and strain effects on electronic structures of transition metal dichalcogenides: 2H- semiconductors (, W; , Se, Te), Phys. Rev. B 85, 033305 (2012).
- Y. Liang, S. Huang, R. Soklaski, and L. Yang, Quasiparticle band-edge energy and band offsets of monolayer of molybdenum and tungsten chalcogenides, Appl. Phys. Lett. 103, 042106 (2013).
- T. Cheiwchanchamnangij and W. R. L. Lambrecht, Quasiparticle band structure calculation of monolayer, bilayer, and bulk , Phys. Rev. B 85, 205302 (2012).
- G. Sallen, L. Bouet, X. Marie, G. Wang, C. R. Zhu, W. P. Han, Y. Lu, P. H. Tan, T. Amand, B. L. Liu, and B. Urbaszek, Robust optical emission polarization in monolayers through selective valley excitation, Phys. Rev. B 86, 081301(R) (2012).
- D. Xiao, G.-B. Liu, W. Feng, X. Xu, and W. Yao, Coupled spin and valley physics in monolayers of and other group-VI dichalcogenides, Phys. Rev. Lett. 108, 196802 (2012).
- M. Baba, Y. Kowaka, U. Nagashima, T. Ishimoto, H. Goto, and N. Nakayama, Geometrical structure of benzene and naphthalene: Ultrahigh-resolution laser spectroscopy and ab initio calculation, J. Chem. Phys. 135, 054305 (2011).
- S. Ketker, M. Kelley, M. Fink, and R. C. Ivey, On an electron diffraction study of the structures of anthraquinone and anthracene, J. Mol. Struct. 77, 127 (1981).
- B. J. Esselman, M. A. Zdanovskaia, A. N. Owen, J. F. Stanton, R. C. Woods, and R. J. McMahon, Precise equilibrium structure of benzene, J. Am. Chem. Soc. 145, 21785 (2023).
- M. S. Deleuze, A. B. Trofimov, and L. S. Cederbaum, Valence one-electron and shake-up ionization bands of polycyclic aromatic hydrocarbons. I. Benzene, naphthalene, anthracene, naphthacene, and pentacene, J. Chem. Phys. 115, 5859 (2001).
- I. Heo, J. C. Lee, B. R. Ozer, and T. Schultz, Mass-correlated high-resolution spectra and the structure of benzene, J. Phys. Chem. Lett. 13, 8278 (2022).
- S. Ketkar and M. Fink, The molecular structure of naphthalene by electron diffraction, J. Mol. Struct. 77, 139 (1981).
- V. Despoja, I. Lončarić, D. J. Mowbray, and L. Marušić, Quasiparticle spectra and excitons of organic molecules deposited on substrates: -BSE approach applied to benzene on graphene and metallic substrates, Phys. Rev. B 88, 235437 (2013).
- I. Ciofini, H. Chermette, and C. Adamo, A mean-field self-interaction correction in density functional theory: Implementation and validation for molecules, Chem. Phys. Lett. 380, 12 (2003).
- P. Baltzer, L. Karlsson, B. Wannberg, G. Öhrwall, D. Holland, M. MacDonald, M. Hayes, and W. Von Niessen, An experimental and theoretical study of the valence shell photoelectron spectrum of the benzene molecule, Chem. Phys. 224, 95 (1997).
- P. Burrow, J. Michejda, and K. Jordan, Electron transmission study of the temporary negative ion states of selected benzenoid and conjugated aromatic hydrocarbons, J. Chem. Phys. 86, 9 (1987).
- X. Leng, J. Feng, T. Chen, C. Liu, and Y. Ma, Optical properties of acene molecules and pentacene crystal from the many-body Green's function method, Phys. Chem. Chem. Phys. 18, 30777 (2016).
- J. B. Neaton, M. S. Hybertsen, and S. G. Louie, Renormalization of molecular electronic levels at metal-molecule interfaces, Phys. Rev. Lett. 97, 216405 (2006).
- X. Blase, C. Attaccalite, and V. Olevano, First-principles calculations for fullerenes, porphyrins, phtalocyanine, and other molecules of interest for organic photovoltaic applications, Phys. Rev. B 83, 115103 (2011).
- P. G. Moses, J. J. Mortensen, B. I. Lundqvist, and J. K. Nørskov, Density functional study of the adsorption and van der Waals binding of aromatic and conjugated compounds on the basal plane of , J. Chem. Phys. 130, 104709 (2009).
- S. Rangarajan and M. Mavrikakis, A comparative analysis of different van der Waals treatments for molecular adsorption on the basal plane of , Surf. Sci. 729, 122226 (2023).
- H.-M. Ho, M. Lorke, and P. Kratzer, Quasiparticle level alignment in anthracene- heterostructures, J. Phys. Chem. C 130, 10047 (2026).
- B. Hammer, L. B. Hansen, and J. K. Nørskov, Improved adsorption energetics within density-functional theory using revised Perdew-Burke-Ernzerhof functionals, Phys. Rev. B 59, 7413 (1999).
- M. Dion, H. Rydberg, E. Schröder, D. C. Langreth, and B. I. Lundqvist, Van der Waals density functional for general geometries, Phys. Rev. Lett. 92, 246401 (2004).
- R. S. Mulliken, Electronic population analysis on LCAO-MO molecular wave functions. I, J. Chem. Phys. 23, 1833 (1955).
- K. Noori, N. L. Q. Cheng, F. Xuan, and S. Y. Quek, Dielectric screening by 2D substrates, 2D Mater. 6, 035036 (2019).
- https://www.gauss-centre.eu.
- D. Alvarez, JUWELS cluster and booster: Exascale pathfinder with modular supercomputing architecture at Juelich Supercomputing Centre, JLSRF 7, A183 (2021).