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Predicting Complex Materials Energetics with a Scalable Compact Nine-Qubit Quantum Machine-Learning Model

Hsu-Kai Cheng1,2, Po-Yu Yang2, Jyh-Pin Chou1, and Chun-Wei Pao2,3,4,*

  • *Contact author: cwpao@gate.sinica.edu.tw

PRX Energy 5, 013004 – Published 22 January, 2026

DOI: https://doi.org/10.1103/j1lk-1cvs

Abstract

Accurate machine-learning (ML) prediction of material energies typically relies on large models with thousands to hundreds of thousands of parameters and scales poorly with the system size. Here, we present a compact hybrid classical-quantum ML framework that predicts the energies of complex materials using fewer than ten qubits, regardless of system size. By compressing local atomic descriptors into a fixed-size feature spectrum, we enable amplitude encoding of chemically diverse systems into shallow quantum circuits. We implement quantum convolutional neural networks (QCNNs) and quantum deep neural networks (QDNNs) with fewer than 100 trainable parameters and achieve prediction errors below 0.05 eV/atom on chemically complex alloys (Co25Ni25(HfTiZr)50) and lithium-intercalated metal-organic frameworks. Our results demonstrate the feasibility of scalable quantum assisted materials modeling and introduce a resource-efficient route toward quantum machine learning for atomistic simulations.

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References (51)

  1. Z. Zhou, Y. Zhou, Q. He, Z. Ding, F. Li, and Y. Yang, Machine learning guided appraisal and exploration of phase design for high entropy alloys, npj Comput. Mater. 5, 128 (2019).
  2. V. Fung, G. Hu, P. Ganesh, and B. G. Sumpter, Machine learned features from density of states for accurate adsorption energy prediction, Nat. Commun. 12, 88 (2021).
  3. T. Lewis-Atwell, P. A. Townsend, and M. N. Grayson, Machine learning activation energies of chemical reactions, WIREs Comput. Mol. Sci. 12, e1593 (2022).
  4. H. Ji, A. Rágyanszki, and R. A. Fournier, Machine learning estimation of reaction energy barriers, Comput. Theor. Chem. 1229, 114332 (2023).
  5. S. Vijay, M. C. Venetos, E. W. C. Spotte-Smith, A. D. Kaplan, M. Wen, and K. A. Persson, CoeffNet: Predicting activation barriers through a chemically-interpretable, equivariant and physically constrained graph neural network, Chem. Sci. 15, 2923 (2024).
  6. H. Wang, L. Zhang, J. Han, and E. Weinan, DeePMD-kit: A deep learning package for many-body potential energy representation and molecular dynamics, Comput. Phys. Commun. 228, 178 (2018).
  7. S. Takamoto, C. Shinagawa, D. Motoki, K. Nakago, W. Li, I. Kurata, T. Watanabe, Y. Yayama, H. Iriguchi, Y. Asano et al., Towards universal neural network potential for material discovery applicable to arbitrary combination of 45 elements, Nat. Commun. 13, 2991 (2022).
  8. H.-A. Chen and C.-W. Pao, Fast and accurate artificial neural network potential model for MAPbI3 perovskite materials, ACS Omega 4, 10950 (2019).
  9. H.-A. Chen, P.-H. Tang, G.-J. Chen, C.-C. Chang, and C.-W. Pao, Microstructure maps of complex perovskite materials from extensive Monte Carlo sampling using machine learning enabled energy model, J. Phys. Chem. Lett. 12, 3591 (2021).
  10. P.-Y. Yang, Y.-H. Chiang, C.-W. Pao, and C.-C. Chang, Hybrid machine learning-enabled potential energy model for atomistic simulation of lithium intercalation into graphite from plating to overlithiation, J. Chem. Theory Comput. 19, 4533 (2023).
  11. K. Schütt, P.-J. Kindermans, H. E. Sauceda Felix, S. Chmiela, A. Tkatchenko, and K.-R. Müller, SchNet: A continuous-filter convolutional neural network for modeling quantum interactions, Adv. Neural Inf. Process. Syst. 30, 992 (2017).
  12. J. Gasteiger, J. Groß, and S. Günnemann, Directional message passing for molecular graphs, arXiv:2003.03123.
  13. S. Takamoto, S. Izumi, and J. Li, TeaNet: Universal neural network interatomic potential inspired by iterative electronic relaxations, Comput. Mater. Sci. 207, 111280 (2022).
  14. K. Schütt, O. Unke, and M. Gastegger, in International Conference on Machine Learning (Proceedings of Machine Learning Research, 2021), p. 9377.
  15. M. C. Caro, H.-Y. Huang, M. Cerezo, K. Sharma, A. Sornborger, L. Cincio, and P. J. Coles, Generalization in quantum machine learning from few training data, Nat. Commun. 13, 4919 (2022).
  16. M. Cerezo, A. Arrasmith, R. Babbush, S. C. Benjamin, S. Endo, K. Fujii, J. R. McClean, K. Mitarai, X. Yuan, L. Cincio et al., Variational quantum algorithms, Nat. Rev. Phys. 3, 625 (2021).
  17. I. Cong, S. Choi, and M. D. Lukin, Quantum convolutional neural networks, Nat. Phys. 15, 1273 (2019).
  18. M. Schuld, I. Sinayskiy, and F. Petruccione, Simulating a perceptron on a quantum computer, Phys. Lett. A 379, 660 (2015).
  19. Y. Cao, G. G. Guerreschi, and A. Aspuru-Guzik, Quantum neuron: An elementary building block for machine learning on quantum computers, arXiv:1711.11240.
  20. M. Leshno, V. Y. Lin, A. Pinkus, and S. Schocken, Multilayer feedforward networks with a nonpolynomial activation function can approximate any function, Neural Netw. 6, 861 (1993).
  21. O. Kiss, F. Tacchino, S. Vallecorsa, and I. Tavernelli, Quantum neural networks force fields generation, Mach. Learn.: Sci. Technol. 3, 035004 (2022).
  22. I. N. M. Le, O. Kiss, J. Schuhmacher, I. Tavernelli, and F. Tacchino, Symmetry-invariant quantum machine learning force fields, New J. Phys. 27, 023015 (2025).
  23. Y. Couzinié, S. Daimon, H. Nishi, N. Ito, Y. Harazono, and Y.-i. Matsushita, Towards improved quantum machine learning for molecular force fields (2025).
  24. Q. He, J. Wang, H. Chen, Z. Ding, Z. Zhou, L. Xiong, J. Luan, J. Pelletier, J. Qiao, Q. Wang et al., A highly distorted ultraelastic chemically complex Elinvar alloy, Nature 602, 251 (2022).
  25. F. Baskoro, H. Q. Wong, K. B. Labasan, C.-W. Cho, C.-W. Pao, P.-Y. Yang, C.-C. Chang, C.-I. Chen, C.-C. Chueh, W. Nie et al., An efficient and reversible battery anode electrode derived from a lead-based metal-organic framework, Energy Fuels 35, 9669 (2021).
  26. A. P. Bartók, M. C. Payne, R. Kondor, and G. Csányi, Gaussian approximation potentials: The accuracy of quantum mechanics, without the electrons, Phys. Rev. Lett. 104, 136403 (2010).
  27. D. A. Varshalovich, A. N. Moskalev, and V. K. Khersonskii, in Quantum theory of Angular Momentum (World Scientific, Singapore, 1988).
  28. See the Supplemental Material at http://link.aps.org/supplemental/10.1103/j1lk-1cvs for a brief description of the methodology of histogram-based encoding (Sec. 3); the nonzero-pixel probability distribution of feature maps using histogram-based encoding (Figs. S3 and S4); training results of QML models using feature maps generated using histogram-based encoding (Fig. S5); optimized parameters of QML models (Tables S1–S4 for the QCNN model and Tables S5 and S6 for the QDNN model—note that the weight-index mappings are illustrated in Figs. S1 and S2 for the QCNN and QDNN models, respectively); more details on computing the Fisher information matrix (Sec. 4); and the eigenvalue distribution of the QCNN (Fig. S6) and QDNN (Fig. S7) models.
  29. C. Zhao and X.-S. Gao, qdnn: Deep neural networks with quantum layers, Quantum Mach. Intell. 3, 15 (2021).
  30. M. Cerezo, A. Sone, T. Volkoff, L. Cincio, and P. J. Coles, Cost function dependent barren plateaus in shallow parametrized quantum circuits, Nat. Commun. 12, 1791 (2021).
  31. J. R. McClean, S. Boixo, V. N. Smelyanskiy, R. Babbush, and H. Neven, Barren plateaus in quantum neural network training landscapes, Nat. Commun. 9, 4812 (2018).
  32. E. Knill, G. Ortiz, and R. D. Somma, Optimal quantum measurements of expectation values of observables, Phys. Rev. A 75, 012328 (2007).
  33. A. Pesah, M. Cerezo, S. Wang, T. Volkoff, A. T. Sornborger, and P. J. Coles, Absence of barren plateaus in quantum convolutional neural networks, Phys. Rev. X 11, 041011 (2021).
  34. J. Behler and M. Parrinello, Generalized neural-network representation of high-dimensional potential-energy surfaces, Phys. Rev. Lett. 98, 146401 (2007).
  35. M. Larocca, S. Thanasilp, S. Wang, K. Sharma, J. Biamonte, P. J. Coles, L. Cincio, J. R. McClean, Z. Holmes, and M. Cerezo, Barren plateaus in variational quantum computing, Nat. Rev. Phys. 1, 174 (2025).
  36. G. Kresse and J. Furthmüller, Efficient iterative schemes for ab initio total-energy calculations using a plane-wave basis set, Phys. Rev. B 54, 11169 (1996).
  37. G. Kresse and J. Furthmüller, Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis set, Comput. Mater. Sci. 6, 15 (1996).
  38. G. Kresse, Ab initio molecular dynamics for liquid metals, J. Non. Cryst. Solids 192-193, 222 (1995).
  39. G. Kresse and D. Joubert, From ultrasoft pseudopotentials to the projector augmented-wave method, Phys. Rev. B 59, 1758 (1999).
  40. P. E. Blöchl, Projector augmented-wave method, Phys. Rev. B 50, 17953 (1994).
  41. H. J. Monkhorst and J. D. Pack, Special points for Brillouin-zone integrations, Phys. Rev. B 13, 5188 (1976).
  42. S. Grimme, J. Antony, S. Ehrlich, and H. Krieg, A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu, J. Chem. Phys. 132, 154104 (2010).
  43. V. Bergholm, J. Izaac, M. Schuld, C. Gogolin, S. Ahmed, V. Ajith, M. S. Alam, G. Alonso-Linaje, B. AkashNarayanan, A. Asadi et al., PennyLane: Automatic differentiation of hybrid quantum-classical computations, arXiv:1811.04968.
  44. S. Plimpton, Fast parallel algorithms for short-range molecular dynamics, J. Comput. Phys. 117, 1 (1995).
  45. J. Bradbury, R. Frostig, P. Hawkins, M. J. Johnson, C. Leary, D. Maclaurin, G. Necula, A. Paszke, J. VanderPlas, S. Wanderman-Milne, and Q. Zhang, JAX: Composable transformations of python+NumPy programs (2018).
  46. R. Frostig, M. J. Johnson, and C. Leary, Compiling machine learning programs via high-level tracing, Syst. Mach. Learn. 4 (2018).
  47. Y. Shee, P.-K. Tsai, C.-L. Hong, H.-C. Cheng, and H.-S. Goan, Qubit-efficient encoding scheme for quantum simulations of electronic structure, Phys. Rev. Res. 4, 023154 (2022).
  48. A. Abbas, D. Sutter, C. Zoufal, A. Lucchi, A. Figalli, and S. Woerner, The power of quantum neural networks, Nat. Comput. Sci. 1, 403 (2021).
  49. J. J. Meyer, Fisher information in noisy intermediate-scale quantum applications, Quantum 5, 539 (2021).
  50. A. Abbas, D. Sutter, A. Figalli, and S. Woerner, Effective dimension of machine learning models, arXiv:2112.04807.
  51. https://github.com/Hsu-Kai/qcnn-energy-demo

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