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  • Open Access

Kinetic Energy Diffusivity and Scaling Velocity Correlation Functions

Jing-Dong Bao1,* and Fabio Marchesoni2,3,†

  • *Contact author: jdbao@bnu.edu.cn
  • †Contact author: fabio.marchesoni@pg.infn.it

Phys. Rev. Lett. 134, 227103 – Published 4 June, 2025

DOI: https://doi.org/10.1103/fmbw-9j8w

Abstract

We propose a Green-Kubo-like relation for kinetic energy diffusivity to investigate the interplay between ergodicity and anomalous diffusion. This approach introduces a fluctuation metric for the time-averaged kinetic energy, which holds for scaling velocity correlation functions. We demonstrate that as stationary diffusive systems transition into an effective ergodic phase, their kinetic energy metric converges to a universal law. This finding provides a robust framework for understanding the dynamics of such systems. Applications to protein folding and single-particle tracking illustrate the practical utility of our approach, offering a clear prescription for extracting key physical parameters, such as the friction constant and relaxation time, from finite experimental datasets. Importantly, this method remains effective even when the underlying processes exhibit weak ergodicity breaking or are bounded. Furthermore, we explore the nonergodic transition associated with the aging velocity correlation function observed in granular gases.

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References (50)

  1. M. H. Lee, Why irreversibility is not a sufficient condition for ergodicity, Phys. Rev. Lett. 98, 190601 (2007).
  2. L. C. Lapas, R. Morgado, M. H. Vainstein, J. M. Rubi, and F. A. Oliveira, Khinchin theorem and anomalous diffusion, Phys. Rev. Lett. 101, 230602 (2008).
  3. S. Burov, R. Metzler, and E. Barkai, Aging and nonergodicity beyond the Khinchin theorem, Proc. Natl. Acad. Sci. U.S.A. 107, 13228 (2010).
  4. R. Metzler and J. Klafter, The random walk’s guide to anomalous diffusion: A fractional dynamics approach, Phys. Rep. 339, 1 (2000).
  5. F. Ionita and H. Meyer-Ortmanns, Physical aging of classical oscillators, Phys. Rev. Lett. 112, 094101 (2014).
  6. A. Dechant, E. Lutz, D. A. Kessler, and E. Barkai, Scaling Green-Kubo relation and application to three aging systems, Phys. Rev. X 4, 011022 (2014).
  7. N. Leibovich and E. Barkai, Aging Wiener-Khinchin theorem, Phys. Rev. Lett. 115, 080602 (2015).
  8. A. Dechant and E. Lutz, Wiener-Khinchin theorem for nonstationary scale-invariant processes, Phys. Rev. Lett. 115, 080603 (2015).
  9. G. Afek, N. Davidson, D. A. Kessler, and E. Barkai, Colloquium: Anomalous statistics of laser-cooled atoms in dissipative optical lattices, Rev. Mod. Phys. 95, 031003 (2023).
  10. K. Huang and I. Szlufarska, Effect of interfaces on the nearby Brownian motion, Nat. Commun. 6, 8558 (2015).
  11. J. P. Boon and S. Yip, Molecular Hydrodynamics (Dover Publications, New York, 2013).
  12. S. Jeney, B. Lukic, J. A. Kraus, T. Franosch, and L. Forro, Anisotropic memory effects in confined colloidal diffusion, Phys. Rev. Lett. 100, 240604 (2008).
  13. K. Suzuki, K. Ritchie, E. Kajikawa, T. Fujiwara, and A. Kusurmi, Rapid hop diffusion of a G-protein-coupled receptor in the plasma membrane as revealed by single-molecule techniques, Biophys. J. 88, 3659 (2005).
  14. I. Golding and E. C. Cox, Physical nature of bacterial cytoplasm, Phys. Rev. Lett. 96, 098102 (2006).
  15. G.-W. Li and X. S. Xie, Central dogma at the single-molecule level in living cells, Nature (London) 475, 308 (2011).
  16. C. Bräuchle, D. C. Lamb, and J. Michaelis, Single Particle Tracking and Single Molecule Energy Transfer (Wiley-VCH, Weinheim, 2010).
  17. G. Guigas and M. Weiss, Sampling the cell with anomalous diffusion—The discovery of slowness, Biophys. J. 94, 90 (2008).
  18. Y. He, S. Burov, R. Metzler, and E. Barkai, Random time-scale invariant diffusion and transport coefficients, Phys. Rev. Lett. 101, 058101 (2008).
  19. R. Metzler, J.-H. Jeon, A. G. Cherstvy, and E. Barkai, Anomalous diffusion models and their properties: Non-stationarity, non-ergodicity, and ageing at the centenary of single particle tracking, Phys. Chem. Chem. Phys. 16, 24128 (2014).
  20. J. D. Bao, X. R. Wang, and W. M. Liu, Ergodic time scale and transitive dynamics in single-particle tracking, Phys. Rev. E 103, 032136 (2021).
  21. J.-H. Jeon and R. Metzler, Inequivalence of time and ensemble averages in ergodic systems: Exponential versus power-law relaxation in confinement, Phys. Rev. E 85, 021147 (2012).
  22. P. Meyer, E. Barkai, and H. Kantz, Scale-invariant Green-Kubo relation for time-averaged diffusivity, Phys. Rev. E 96, 062122 (2017).
  23. D. E. Sagnella, J. E. Straub, and D. Thirumalai, Time scales and pathways for kinetic energy relaxation in solvated proteins: Application to carbonmonoxy myoglobin, J. Chem. Phys. 113, 7702 (2000).
  24. E. Lutz, Power-law tail distribution and nonergodicity, Phys. Rev. Lett. 93, 190602 (2004).
  25. R. L. Jack, Ergodicity and large deviations in physical systems with stochastic dynamics, Eur. Phys. J. B 93, 74 (2020).
  26. J.-D. Bao, Y.-Z. Zhuo, F. A. Oliveira, and P. Hänggi, Intermediate dynamics between Newton and Langevin, Phys. Rev. E 74, 061111 (2006).
  27. R. Morgado, F. A. Oliveira, G. G. Batrouni, and A. Hansen, Relation between anomalous and normal diffusion in systems with memory, Phys. Rev. Lett. 89, 100601 (2002).
  28. I. V. L. Costa, R. Morgado, M. V. B. T. Lima, and F. A. Oliveira, The fluctuation-dissipation theorem fails for fast superdiffusion, Europhys. Lett. 63, 173 (2003).
  29. M. H. Vainstein, I. V. L. Costa, R. Morgado, and F. A. Oliveira, Non-exponential relaxation for anomalous diffusion, Europhys. Lett. 73, 726 (2006).
  30. N. Pottier, Aging properties of an anomalously diffusing particle, Physica (Amsterdam) 317A, 371 (2003).
  31. T. Sandev, R. Metzler, and Ž. Tomovski, Correlation functions for the fractional generalized Langevin equation in the presence of internal and external noise, J. Math. Phys. (N.Y.) 55, 023301 (2014).
  32. F. Marchesoni and A. Taloni, Subdiffusion and long-time correlations in a stochastic single file, Phys. Rev. Lett. 97, 106101 (2006).
  33. I. M. Sokolov, Models of anomalous diffusion in crowded enviroments, Soft Matter 8, 9043 (2012).
  34. C. Ayaza, L. Teppera, F. N. Brüniga, J. Kapplerb, J. O. Daldropa, and R. R. Netza, Non-Markovian modeling of protein folding, Proc. Natl. Acad. Sci. U.S.A. 118, e2023856118 (2021).
  35. J. C. Smith, Protein dynamics: Comparison of simulations with inelastic neutron scattering experiments, Q. Rev. Biophys. 24, 227 (1991).
  36. R. Satija, A. Das, and D. E. Makarov, Transition path times reveal memory effects and anomalous diffusion in the dynamics of protein folding, J. Chem. Phys. 147, 152707 (2017).
  37. A. Mura and G. Pagnini, Characterizations and simulations of a class of stochastic processes to model anomalous diffusion, J. Phys. A 41, 285003 (2008).
  38. G. Pagnini, Short note on the emergence of fractional kinetics, Physica (Amsterdam) 409A, 29 (2014).
  39. I. Goychuk and T. Pöschel, Finite-range viscoelastic subdiffusion in disordered systems with inclusion of inertial effects, New J. Phys. 22, 113018 (2020).
  40. I. Goychuk and T. Pöschel, Insufficient evidence for ageing in protein dynamics, Nat. Phys. 17, 773 (2021).
  41. See Supplemental Material at http://link.aps.org/supplemental/10.1103/fmbw-9j8w for technical details.
  42. W. Deng and E. Barkai, Ergodic properties of fractional Brownian-Langevin motion, Phys. Rev. E 79, 011112 (2009).
  43. F. Thiel and I. M. Sokolov, Weak ergodicity breaking in an anomalous diffusion process of mixed origins, Phys. Rev. E 89, 012136 (2014).
  44. D. Molina-García, T. M. Pham, P. Paradisi, C. Manzo, and G. Pagnini, Fractional kinetics emerging from ergodicity breaking in random media, Phys. Rev. E 94, 052147 (2016).
  45. N. V. Brilliantov and T. Pöschel, Kinetic Theory of Granular Gases (Oxford University Press, Oxford, UK, 2004).
  46. P. K. Haff, Grain flow as a fluid-mechanical phenomenon, J. Fluid Mech. 134, 401 (1983).
  47. R. Hernandez, The projection of a mechanical system onto the irreversible generalized Langevin equation, J. Chem. Phys. 111, 7701 (1999).
  48. A. S Bodrova, A. V. Chechkin, A. G. Cherstvy, and R. Metzler, Ultraslow scaled Brownian motion, New J. Phys. 17, 063038 (2015).
  49. J. D. Bao and X. R. Wang, Generalized Einstein relation for aging processes, Commun. Phys. 7, 249 (2024).
  50. J. D. Bao, Y. Y. Li, and F. Marchesoni, Consistent Hamiltonian models for space-momentum diffusion, Phys. Rev. E 105, L052105 (2022).

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