Understanding how coherent quantum dynamics give way to correlation-dominated behavior in low-dimensional systems remains a central challenge in quantum many-body physics. Here, we investigate a one-dimensional Bose-Josephson junction confined in a box trap using the multiconfigurational time-dependent Hartree method for bosons. By varying the interaction strength and initial population imbalance, we identify distinct dynamical regimes governed by the competition between coherence and correlation-induced fragmentation. Weak interactions support coherent Josephson oscillations, whereas increasing imbalance leads to damping. At intermediate interaction strength, varying only the initial imbalance induces a crossover from nearly pure coherent oscillations to many-body dephasing with collapse-and-revival dynamics and ultimately to equilibration accompanied by strong fragmentation and the saturation of many-body observables. In the strongly interacting regime, the system enters a dynamical freezing regime characterized by pronounced fragmentation, well-separated particle-resolved density peaks, and strongly suppressed tunneling. A systematic comparison with the Bose-Hubbard model reveals excellent agreement in the weakly interacting regime, while progressively larger deviations emerge as higher-orbital occupations beyond the two-mode approximation become significant. These results provide a unified picture of the emergence and competition of coherence, many-body dephasing, equilibration, and dynamical freezing, while delineating the regime of validity of the Bose-Hubbard description.

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• Bose-Einstein condensates
• Cold atoms & matter waves