As quantum chips scale up for large-scale computation, hardware defects become inevitable and must be carefully addressed. In this work we introduce Halma, a defect mitigation technique empowered by an expanded native gate set that incorporates the $\mathrm{i}\mathrm{SWAP}$ gate alongside the conventional $\mathrm{CNOT}$ gate. Halma emerges as a supplementary technique within the defect mitigation toolbox, offering effective mitigation of ancilla qubit defects encountered during surface code stabilizer measurements while maintaining compatibility with existing superstabilizer-based methodologies. Halma introduces zero reduction in the spacelike distance of the code without further sacrifice to the timelike distance. Numerical simulation suggests that in comparison to previous methods, Halma could provide an order of magnitude improvement in the average logical error rate under realistic experimental settings, leading to a $\sim 3\times$ reduction in the footprint of a teraquop. These results clearly demonstrate the capability of Halma in easing the near-term realization of fault-tolerant quantum computing on hardware with fabrication defects and exemplifies how leveraging intrinsic hardware capabilities can enhance quantum hardware performance.

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• Quantum error correction
• Quantum gates
• Surface code quantum computing